RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 ZNF544Q6NX49 715 aa11.06□□□□□ -0.64
NUP54-202ENST00000502850 GDPD3Q7L5L3 318 aa11.06□□□□□ -0.64
NUP54-202ENST00000502850 OAFQ86UD1 273 aa11.06□□□□□ -0.64
NUP54-202ENST00000502850 ZNF761Q86XN6 746 aaPredicted RBP11.06□□□□□ -0.64
NUP54-202ENST00000502850 MARCH9Q86YJ5 346 aa11.06□□□□□ -0.64
NUP54-202ENST00000502850 CARFQ8N187 725 aa11.06□□□□□ -0.64
NUP54-202ENST00000502850 PRSS33Q8NF86 280 aa11.06□□□□□ -0.64
NUP54-202ENST00000502850 OR7G1Q8NGA0 311 aa11.06□□□□□ -0.64
NUP54-202ENST00000502850 OR13C2Q8NGS9 318 aa11.06□□□□□ -0.64
NUP54-202ENST00000502850 GRHL3Q8TE85 626 aa11.06□□□□□ -0.64
NUP54-202ENST00000502850 CNOT9Q92600 299 aaKnown RBP11.06□□□□□ -0.64
NUP54-202ENST00000502850 EFHD2Q96C19 240 aaPredicted RBP11.06□□□□□ -0.64
NUP54-202ENST00000502850 ZNF649Q9BS31 505 aa11.06□□□□□ -0.64
NUP54-202ENST00000502850 TMED9Q9BVK6 235 aa11.06□□□□□ -0.64
NUP54-202ENST00000502850 SLC19A3Q9BZV2 496 aa11.06□□□□□ -0.64
NUP54-202ENST00000502850 STARD5Q9NSY2 213 aa11.06□□□□□ -0.64
NUP54-202ENST00000502850 FBXO34Q9NWN3 711 aa11.06□□□□□ -0.64
NUP54-202ENST00000502850 HCN3Q9P1Z3 774 aa11.06□□□□□ -0.64
NUP54-202ENST00000502850 TLCD2A6NGC4 264 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 SEC14L5O43304 696 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 RNF13O43567 381 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 HRO43593 1189 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 DYRK3O43781 588 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 TMCC2O75069 709 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 PTP4A3O75365 173 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 IGF2P01344 180 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 NOS3P29474 1203 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 RFX3P48380 749 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 EPHA4P54764 986 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 FXYD6P3P58550 94 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 LGALS3BPQ08380 585 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 ZNF79Q15937 498 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 GATAD2AQ86YP4 633 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 KLBQ86Z14 1044 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 SLITRK4Q8IW52 837 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 ARL14Q8N4G2 192 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 ZNF527Q8NB42 609 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 SLC37A3Q8NCC5 494 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 NACC2Q96BF6 587 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 KCTD12Q96CX2 325 aaKnown RBP11.05□□□□□ -0.64
NUP54-202ENST00000502850 PEX11GQ96HA9 241 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 NDEL1Q9GZM8 345 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 RAB33BQ9H082 229 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 CHRDQ9H2X0 955 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 TBC1D17Q9HA65 648 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 PDE7BQ9NP56 450 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 ATP13A2Q9NQ11 1180 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 C14orf119Q9NWQ9 140 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 YARS2Q9Y2Z4 477 aaKnown RBP11.05□□□□□ -0.64
NUP54-202ENST00000502850 OR10H1Q9Y4A9 318 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 NOX1Q9Y5S8 564 aa11.05□□□□□ -0.64
NUP54-202ENST00000502850 SCN2AQ99250 2005 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 IGHV1OR15-9A0A0B4J2B8 117 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 FAM183AA6NL82 134 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 SHISA7A6NL88 538 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 NPIPB9F8W1W9 429 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 POLR1CO15160 346 aaPredicted RBP11.04□□□□□ -0.64
NUP54-202ENST00000502850 FOXS1O43638 330 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 NDUFB2O95178 105 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 TRAPPC2P0DI81 140 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 TRAPPC2BP0DI82 140 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 CHRNB1P11230 501 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 CD38P28907 300 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 ACAA2P42765 397 aaKnown RBP11.04□□□□□ -0.64
NUP54-202ENST00000502850 GPR3P46089 330 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 RPS5P46782 204 aaKnown RBP11.04□□□□□ -0.64
NUP54-202ENST00000502850 NUBP1P53384 320 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 TPTEP56180 551 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 ACTA2P62736 377 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 ACTG2P63267 376 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 FUT7Q11130 342 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 RIN1Q13671 783 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 ZNF267Q14586 743 aaPredicted RBP11.04□□□□□ -0.64
NUP54-202ENST00000502850 GRM7Q14831 915 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 KLHL12Q53G59 568 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 AGAP6Q5VW22 663 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 PAMR1Q6UXH9 720 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 LINC00114Q6XXX2 140 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 Q6ZS52 159 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 RAB43Q86YS6 212 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 POMGNT2Q8NAT1 580 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 OR10H4Q8NGA5 316 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 KISS1RQ969F8 398 aaPredicted RBP11.04□□□□□ -0.64
NUP54-202ENST00000502850 SGTBQ96EQ0 304 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 ZDHHC12Q96GR4 267 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 AGAP4Q96P64 663 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 ORAI3Q9BRQ5 295 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 MIXL1Q9H2W2 232 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 RERGLQ9H628 205 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 CAPN10Q9HC96 672 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 MOV10Q9HCE1 1003 aaKnown RBP11.04□□□□□ -0.64
NUP54-202ENST00000502850 MEPEQ9NQ76 525 aaPredicted RBP11.04□□□□□ -0.64
NUP54-202ENST00000502850 FLRT3Q9NZU0 649 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 IL20RAQ9UHF4 553 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 SERTAD3Q9UJW9 196 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 MRTO4Q9UKD2 239 aaKnown RBP11.04□□□□□ -0.64
NUP54-202ENST00000502850 TBC1D24Q9ULP9 559 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 MRPS17Q9Y2R5 130 aaKnown RBP11.04□□□□□ -0.64
NUP54-202ENST00000502850 MMACHCQ9Y4U1 282 aa11.04□□□□□ -0.64
NUP54-202ENST00000502850 PCDHGB7Q9Y5F8 929 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms