RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 HMGN2P46Q86SG4 172 aa13.5□□□□□ -0.25
USP39-217ENST00000491659 CDC20BQ86Y33 519 aa13.5□□□□□ -0.25
USP39-217ENST00000491659 ANKFN1Q8N957 763 aa13.5□□□□□ -0.25
USP39-217ENST00000491659 ZNF610Q8N9Z0 462 aa13.5□□□□□ -0.25
USP39-217ENST00000491659 ZNF563Q8TA94 476 aa13.5□□□□□ -0.25
USP39-217ENST00000491659 RNF128Q8TEB7 428 aa13.5□□□□□ -0.25
USP39-217ENST00000491659 WDR60Q8WVS4 1066 aa13.5□□□□□ -0.25
USP39-217ENST00000491659 NRGNQ92686 78 aa13.5□□□□□ -0.25
USP39-217ENST00000491659 SRXN1Q9BYN0 137 aa13.5□□□□□ -0.25
USP39-217ENST00000491659 QRSL1Q9H0R6 528 aaKnown RBP13.5□□□□□ -0.25
USP39-217ENST00000491659 COQ10BQ9H8M1 238 aa13.5□□□□□ -0.25
USP39-217ENST00000491659 FANCFQ9NPI8 374 aa13.5□□□□□ -0.25
USP39-217ENST00000491659 EXOSC3Q9NQT5 275 aaKnown RBP13.5□□□□□ -0.25
USP39-217ENST00000491659 SERINC1Q9NRX5 453 aa13.5□□□□□ -0.25
USP39-217ENST00000491659 P2RX2Q9UBL9 471 aa13.5□□□□□ -0.25
USP39-217ENST00000491659 TESMINQ9Y4I5 508 aa13.5□□□□□ -0.25
USP39-217ENST00000491659 PRAMEF27A3QJZ7 478 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 EFNA2O43921 213 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 DNAJA2O60884 412 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 CHRM4P08173 479 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 ZCCHC18P0CG32 403 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 AGTR1P30556 359 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 UGT2B10P36537 528 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 CRATP43155 626 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 IDH3AP50213 366 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 SESN3P58005 492 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 KCNJ10P78508 379 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 MERTKQ12866 999 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 EXOC3L2Q2M3D2 409 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 TMEM201Q5SNT2 666 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 AP1ARQ63HQ0 302 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 FCRLAQ7L513 359 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 STK32CQ86UX6 486 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 CMIPQ8IY22 773 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 ARFGAP2Q8N6H7 521 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 SLC25A43Q8WUT9 341 aaPredicted RBP13.49□□□□□ -0.25
USP39-217ENST00000491659 ROBO4Q8WZ75 1007 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 NINJ1Q92982 152 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 VPS33AQ96AX1 596 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 MED18Q9BUE0 208 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 CCDC28BQ9BUN5 200 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 SLC38A1Q9H2H9 487 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 TPT1P8Q9HAU6 139 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 ACER3Q9NUN7 267 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 ZNF226Q9NYT6 803 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 CALML5Q9NZT1 146 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 SPIN1Q9Y657 262 aaPredicted RBP13.49□□□□□ -0.25
USP39-217ENST00000491659 MPDZO75970 2070 aa13.49□□□□□ -0.25
USP39-217ENST00000491659 A0A1W2PNR3 127 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 TMEM247A6NEH6 219 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 AGAP5A6NIR3 686 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 C16orf97H3BN30 126 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 DBIP07108 87 aaKnown RBP13.48□□□□□ -0.25
USP39-217ENST00000491659 UQCRBP14927 111 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 IL7RP16871 459 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 CCKARP32238 428 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 RYKP34925 604 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 MRPL19P49406 292 aaKnown RBP13.48□□□□□ -0.25
USP39-217ENST00000491659 AQP5P55064 265 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 DSTNP60981 165 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 PLEKHM3Q6ZWE6 761 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 PEX5LQ8IYB4 626 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 ABHD3Q8WU67 409 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 PMM1Q92871 262 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 ZNF524Q96C55 264 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 ZG16BQ96DA0 208 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 OR5B2Q96R09 309 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 EBF4Q9BQW3 602 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 TACO1Q9BSH4 297 aaKnown RBP13.48□□□□□ -0.25
USP39-217ENST00000491659 RAD21L1Q9H4I0 556 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 C12orf49Q9H741 205 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 MTHFD2LQ9H903 347 aaPredicted RBP13.48□□□□□ -0.25
USP39-217ENST00000491659 CACYBPQ9HB71 228 aaKnown RBP13.48□□□□□ -0.25
USP39-217ENST00000491659 PLSCR4Q9NRQ2 329 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 SLC6A13Q9NSD5 602 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 THUMPD1Q9NXG2 353 aaKnown RBP13.48□□□□□ -0.25
USP39-217ENST00000491659 KLHL28Q9NXS3 571 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 KLHL13Q9P2N7 655 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 ST6GALNAC2Q9UJ37 374 aa13.48□□□□□ -0.25
USP39-217ENST00000491659 CCDC168Q8NDH2 2452 aa13.47□□□□□ -0.25
USP39-217ENST00000491659 CLDN24A6NM45 220 aa13.47□□□□□ -0.25
USP39-217ENST00000491659 BCAS1O75363 584 aaPredicted RBP13.47□□□□□ -0.25
USP39-217ENST00000491659 PRKD3O94806 890 aa13.47□□□□□ -0.25
USP39-217ENST00000491659 BCHEP06276 602 aa13.47□□□□□ -0.25
USP39-217ENST00000491659 ETFAP13804 333 aa13.47□□□□□ -0.25
USP39-217ENST00000491659 RPS4Y1P22090 263 aaKnown RBP13.47□□□□□ -0.25
USP39-217ENST00000491659 APOBEC1P41238 236 aaKnown RBP13.47□□□□□ -0.25
USP39-217ENST00000491659 ART1P52961 327 aa13.47□□□□□ -0.25
USP39-217ENST00000491659 CRISP3P54108 245 aa13.47□□□□□ -0.25
USP39-217ENST00000491659 RAC3P60763 192 aa13.47□□□□□ -0.25
USP39-217ENST00000491659 IRX1P78414 480 aaPredicted RBP13.47□□□□□ -0.25
USP39-217ENST00000491659 POU4F3Q15319 338 aa13.47□□□□□ -0.25
USP39-217ENST00000491659 GTDC1Q4AE62 458 aa13.47□□□□□ -0.25
USP39-217ENST00000491659 SLC2A7Q6PXP3 512 aa13.47□□□□□ -0.25
USP39-217ENST00000491659 BEND4Q6ZU67 534 aa13.47□□□□□ -0.25
USP39-217ENST00000491659 GRINAQ7Z429 371 aa13.47□□□□□ -0.25
USP39-217ENST00000491659 SLC43A2Q8N370 569 aa13.47□□□□□ -0.25
USP39-217ENST00000491659 CNOT9Q92600 299 aaKnown RBP13.47□□□□□ -0.25
USP39-217ENST00000491659 AURKBQ96GD4 344 aaPredicted RBP13.47□□□□□ -0.25
USP39-217ENST00000491659 MAGEB18Q96M61 343 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms