RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 SCLYQ96I15 445 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 BBS4Q96RK4 519 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 ZNF559Q9BR84 538 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 ZCCHC2Q9C0B9 1178 aaKnown RBP10.85□□□□□ -0.67
CPSF3-202ENST00000460593 SLC6A15Q9H2J7 730 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 ANKRD19PQ9H560 264 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 IFT22Q9H7X7 185 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 TCF20Q9UGU0 1960 aaKnown RBP10.85□□□□□ -0.67
CPSF3-202ENST00000460593 CAMK2AQ9UQM7 478 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 OR10H1Q9Y4A9 318 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 TRAV27A0A087WT01 109 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 H0YC42 278 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 MAKP20794 623 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 PRLHRP49683 370 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 PRR5P85299 388 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 PITPNAQ00169 270 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 LGALS3BPQ08380 585 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 ST3GAL3Q11203 375 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 CSRP2Q16527 193 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 HENMT1Q5T8I9 393 aaKnown RBP10.85□□□□□ -0.67
CPSF3-202ENST00000460593 WDR88Q6ZMY6 472 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 UBE3DQ7Z6J8 389 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 CMIPQ8IY22 773 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 SLC41A3Q96GZ6 507 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 UQCC2Q9BRT2 126 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 ACTR6Q9GZN1 396 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 KLHL31Q9H511 634 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 SCN2AQ99250 2005 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 SCN3AQ9NY46 2000 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 LCMT2O60294 686 aaKnown RBP10.85□□□□□ -0.67
CPSF3-202ENST00000460593 CREBL2O60519 120 aaPredicted RBP10.85□□□□□ -0.67
CPSF3-202ENST00000460593 B3GALNT1O75752 331 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 GAAP10253 952 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 TEAD1P28347 426 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 IFNGR2P38484 337 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 SHC2P98077 582 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 EIF2B5Q13144 721 aaKnown RBP10.85□□□□□ -0.67
CPSF3-202ENST00000460593 CAMK1Q14012 370 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 PRPF38BQ5VTL8 546 aaKnown RBP10.85□□□□□ -0.67
CPSF3-202ENST00000460593 LRRN1Q6UXK5 716 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 PXKQ7Z7A4 578 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 OR4D10Q8NGI6 311 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 CASD1Q96PB1 797 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 TEAD3Q99594 435 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 VN1R3Q9BXE9 311 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 SLC38A1Q9H2H9 487 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 Q9Y3F1 56 aa10.85□□□□□ -0.67
CPSF3-202ENST00000460593 NPIPA5A0A0B4J1W7 369 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 A0A1B0GUH1 482 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 ABHD14A-ACY1A0A1B0GW23 586 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 NPIPA7E9PJI5 369 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 PLPP2O43688 288 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 OR1F1O43749 312 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 HIST1H2ABP04908 130 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 GIPP09681 153 aaPredicted RBP10.84□□□□□ -0.67
CPSF3-202ENST00000460593 NPIPA8P0DM63 369 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 FPR3P25089 353 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 GRPRP30550 384 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 PDX1P52945 283 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 YOD1Q5VVQ6 348 aaPredicted RBP10.84□□□□□ -0.67
CPSF3-202ENST00000460593 ZNF793Q6ZN11 406 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 HIST3H2AQ7L7L0 130 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 TET1Q8NFU7 2136 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 OR13C2Q8NGS9 318 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 OR2A12Q8NGT7 310 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 OR10K1Q8NGX5 313 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 SUN3Q8TAQ9 357 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 FANK1Q8TC84 345 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 ACOT11Q8WXI4 607 aaPredicted RBP10.84□□□□□ -0.67
CPSF3-202ENST00000460593 SMPDL3BQ92485 455 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 HIST1H2ACQ93077 130 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 SLC25A38Q96DW6 304 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 ZMYND19Q96E35 227 aaPredicted RBP10.84□□□□□ -0.67
CPSF3-202ENST00000460593 PPP1R16AQ96I34 528 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 IFT27Q9BW83 186 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 TAS2R3Q9NYW6 316 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 MLXQ9UH92 298 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 ZNF230Q9UIE0 474 aaPredicted RBP10.84□□□□□ -0.67
CPSF3-202ENST00000460593 IMPA2O14732 288 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 PCDH8O95206 1070 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 POP4O95707 220 aaKnown RBP10.84□□□□□ -0.67
CPSF3-202ENST00000460593 FGBP02675 491 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 ATP1B1P05026 303 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 CLTBP09497 229 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 MC3RP41968 323 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 DYRK1AQ13627 763 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 CRMP1Q14194 572 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 Q6ZNB5 142 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 FAM129CQ86XR2 697 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 SLC44A3Q8N4M1 653 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 GFI1Q99684 422 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 PELOQ9BRX2 385 aaKnown RBP10.84□□□□□ -0.67
CPSF3-202ENST00000460593 TEX12Q9BXU0 123 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 MS4A8Q9BY19 250 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 NKX6-2Q9C056 277 aaPredicted RBP10.84□□□□□ -0.67
CPSF3-202ENST00000460593 FN3KQ9H479 309 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 ANKRD10Q9NXR5 420 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 ACTR10Q9NZ32 417 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 OPN4Q9UHM6 478 aa10.84□□□□□ -0.67
CPSF3-202ENST00000460593 TUBAL3A6NHL2 446 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms