RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 ALPK2Q86TB3 2170 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 OR6C65A6NJZ3 312 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 PCDH8O95206 1070 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 TBX6O95947 436 aaPredicted RBP12.51□□□□□ -0.41
SKA3-201ENST00000298260 APOC1P02654 83 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 CATP04040 527 aaKnown RBP12.51□□□□□ -0.41
SKA3-201ENST00000298260 ZGLP1P0C6A0 271 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 TMIGD3P0DMS9 266 aaPredicted RBP12.51□□□□□ -0.41
SKA3-201ENST00000298260 IFNGR1P15260 489 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 C4BPBP20851 252 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 GSTM3P21266 225 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 CD70P32970 193 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 RPL3P39023 403 aaKnown RBP12.51□□□□□ -0.41
SKA3-201ENST00000298260 SPINT3P49223 89 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 RAG2P55895 527 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 CHST9Q7L1S5 443 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 HSD11B1LQ7Z5J1 315 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 CHST14Q8NCH0 376 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 MS4A4EQ96PG1 132 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 PRKAG2Q9UGJ0 569 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 CAMK2AQ9UQM7 478 aa12.51□□□□□ -0.41
SKA3-201ENST00000298260 CDC123O75794 336 aaPredicted RBP12.5□□□□□ -0.41
SKA3-201ENST00000298260 SLCO2B1O94956 709 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 RASGRP1O95267 797 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 ACAA1P09110 424 aaPredicted RBP12.5□□□□□ -0.41
SKA3-201ENST00000298260 C1GALT1C1LP0DN25 315 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 PVALBP20472 110 aaPredicted RBP12.5□□□□□ -0.41
SKA3-201ENST00000298260 SERPINA4P29622 427 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 UBE2IP63279 158 aaKnown RBP12.5□□□□□ -0.41
SKA3-201ENST00000298260 PITPNAQ00169 270 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 ZNF528Q3MIS6 628 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 LRRC37A5PQ49AS3 106 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 ZNF805Q5CZA5 627 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 C11orf88Q6PI97 169 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 GLB1LQ6UWU2 654 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 FCRLAQ7L513 359 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 MRGPREQ86SM8 312 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 CBARPQ8N350 705 aaPredicted RBP12.5□□□□□ -0.41
SKA3-201ENST00000298260 RASGEF1AQ8N9B8 481 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 TM4SF18Q96CE8 201 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 ELP4Q96EB1 424 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 PPP1R16AQ96I34 528 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 DPH1Q9BZG8 443 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 UBQLN3Q9H347 655 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 TMEM231Q9H6L2 316 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 HMX1Q9NP08 348 aaPredicted RBP12.5□□□□□ -0.41
SKA3-201ENST00000298260 MED11Q9P086 117 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 P2RX2Q9UBL9 471 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 MPTX1A8MV57 137 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 J3QRE1 110 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 OR2A4O95047 310 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 SERPIND1P05546 499 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 SRSF3P84103 164 aaKnown RBP12.5□□□□□ -0.41
SKA3-201ENST00000298260 PLA2G7Q13093 441 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 CAMK1Q14012 370 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 GPNMBQ14956 572 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 UBXN2BQ14CS0 331 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 AGERQ15109 404 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 SWI5Q1ZZU3 235 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 MANEAQ5SRI9 462 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 ZNF626Q68DY1 528 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 IKBIPQ70UQ0 350 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 ZNF296Q8WUU4 475 aaPredicted RBP12.5□□□□□ -0.41
SKA3-201ENST00000298260 NXPE3Q969Y0 559 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 OR2A7Q96R45 310 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 RIOK2Q9BVS4 552 aaKnown RBP12.5□□□□□ -0.41
SKA3-201ENST00000298260 CHST6Q9GZX3 395 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 TMEM138Q9NPI0 162 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 POT1Q9NUX5 634 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 SZT2Q5T011 3432 aa12.5□□□□□ -0.41
SKA3-201ENST00000298260 SULT1C2O00338 296 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 SLC16A5O15375 505 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 TMPRSS11DO60235 418 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 ERAL1O75616 437 aaKnown RBP12.49□□□□□ -0.41
SKA3-201ENST00000298260 IL9P15248 144 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 ADCYAP1P18509 176 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 EPHA4P54764 986 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 DYRK1AQ13627 763 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 SLC35G5Q96KT7 338 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 UROC1Q96N76 676 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 NKX3-1Q99801 234 aaPredicted RBP12.49□□□□□ -0.41
SKA3-201ENST00000298260 TRMT61BQ9BVS5 477 aaKnown RBP12.49□□□□□ -0.41
SKA3-201ENST00000298260 SLC19A3Q9BZV2 496 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 TMEM272A0A1B0GTI8 110 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 ACOD1A6NK06 481 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 PRAMEF2O60811 474 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 ATP1B1P05026 303 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 FABP1P07148 127 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 ZNF806P0C7X5 589 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 PSMB10P40306 273 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 YOD1Q5VVQ6 348 aaPredicted RBP12.49□□□□□ -0.41
SKA3-201ENST00000298260 B3GNTL1Q67FW5 361 aaPredicted RBP12.49□□□□□ -0.41
SKA3-201ENST00000298260 NIPAL3Q6P499 406 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 ZCCHC12Q6PEW1 402 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 ZNF783Q6ZMS7 281 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 SPICQ8N5J4 248 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 FAM98AQ8NCA5 519 aaKnown RBP12.49□□□□□ -0.41
SKA3-201ENST00000298260 FAM71CQ8NEG0 241 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 DOK4Q8TEW6 326 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 SMPDL3BQ92485 455 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms