RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 HBQ1P09105 142 aa14.09□□□□□ -0.15
SF3B4-201ENST00000271628 IFI30P13284 250 aa14.09□□□□□ -0.15
SF3B4-201ENST00000271628 DAB2P98082 770 aa14.09□□□□□ -0.15
SF3B4-201ENST00000271628 ZNF91Q05481 1191 aa14.09□□□□□ -0.15
SF3B4-201ENST00000271628 CD300CQ08708 224 aa14.09□□□□□ -0.15
SF3B4-201ENST00000271628 MED22Q15528 200 aa14.09□□□□□ -0.15
SF3B4-201ENST00000271628 KLHL22Q53GT1 634 aa14.09□□□□□ -0.15
SF3B4-201ENST00000271628 SYT14P1Q58G82 188 aa14.09□□□□□ -0.15
SF3B4-201ENST00000271628 TRIM61Q5EBN2 209 aa14.09□□□□□ -0.15
SF3B4-201ENST00000271628 ALG10BQ5I7T1 473 aa14.09□□□□□ -0.15
SF3B4-201ENST00000271628 RNLSQ5VYX0 342 aa14.09□□□□□ -0.15
SF3B4-201ENST00000271628 WDR88Q6ZMY6 472 aa14.09□□□□□ -0.15
SF3B4-201ENST00000271628 BMP8AQ7Z5Y6 402 aa14.09□□□□□ -0.15
SF3B4-201ENST00000271628 PARP16Q8N5Y8 322 aa14.09□□□□□ -0.15
SF3B4-201ENST00000271628 POC5Q8NA72 575 aa14.09□□□□□ -0.15
SF3B4-201ENST00000271628 ZSCAN1Q8NBB4 408 aa14.09□□□□□ -0.15
SF3B4-201ENST00000271628 FGF11Q92914 225 aa14.09□□□□□ -0.15
SF3B4-201ENST00000271628 BPIFA2Q96DR5 249 aa14.09□□□□□ -0.15
SF3B4-201ENST00000271628 IGLV3-12A0A075B6K2 115 aa14.08□□□□□ -0.15
SF3B4-201ENST00000271628 OR6C76A6NM76 312 aa14.08□□□□□ -0.15
SF3B4-201ENST00000271628 PRODHO43272 600 aa14.08□□□□□ -0.15
SF3B4-201ENST00000271628 RCBTB2O95199 551 aa14.08□□□□□ -0.15
SF3B4-201ENST00000271628 CSTF2P33240 577 aaKnown RBP eCLIP14.08□□□□□ -0.15
SF3B4-201ENST00000271628 COPZ1P61923 177 aa14.08□□□□□ -0.15
SF3B4-201ENST00000271628 CLEC12AQ5QGZ9 265 aa14.08□□□□□ -0.15
SF3B4-201ENST00000271628 HLA-DQA1Q5Y7H0 255 aa14.08□□□□□ -0.15
SF3B4-201ENST00000271628 BPHLQ86WA6 291 aaPredicted RBP14.08□□□□□ -0.15
SF3B4-201ENST00000271628 ZNF321PQ8N8H1 164 aa14.08□□□□□ -0.15
SF3B4-201ENST00000271628 DTWD2Q8NBA8 298 aa14.08□□□□□ -0.15
SF3B4-201ENST00000271628 OR52L1Q8NGH7 329 aa14.08□□□□□ -0.15
SF3B4-201ENST00000271628 OR1N1Q8NGS0 311 aa14.08□□□□□ -0.15
SF3B4-201ENST00000271628 IFI44Q8TCB0 444 aa14.08□□□□□ -0.15
SF3B4-201ENST00000271628 BRIX1Q8TDN6 353 aaKnown RBP14.08□□□□□ -0.15
SF3B4-201ENST00000271628 GRHL3Q8TE85 626 aa14.08□□□□□ -0.15
SF3B4-201ENST00000271628 ADIPOR1Q96A54 375 aa14.08□□□□□ -0.15
SF3B4-201ENST00000271628 EFHD2Q96C19 240 aaPredicted RBP14.08□□□□□ -0.15
SF3B4-201ENST00000271628 ZNF426Q9BUY5 554 aa14.08□□□□□ -0.15
SF3B4-201ENST00000271628 DPH1Q9BZG8 443 aa14.08□□□□□ -0.15
SF3B4-201ENST00000271628 NXF5Q9H1B4 397 aaKnown RBP14.08□□□□□ -0.15
SF3B4-201ENST00000271628 SYNDIG1Q9H7V2 258 aa14.08□□□□□ -0.15
SF3B4-201ENST00000271628 ADAMTS9Q9P2N4 1935 aa14.08□□□□□ -0.16
SF3B4-201ENST00000271628 SEC16AO15027 2179 aa14.08□□□□□ -0.16
SF3B4-201ENST00000271628 MUC3AQ02505 3323 aa14.08□□□□□ -0.16
SF3B4-201ENST00000271628 SCDO00767 359 aa14.08□□□□□ -0.16
SF3B4-201ENST00000271628 SCRG1O75711 98 aa14.08□□□□□ -0.16
SF3B4-201ENST00000271628 SPANXN2Q5MJ10 180 aa14.08□□□□□ -0.16
SF3B4-201ENST00000271628 SLC30A6Q6NXT4 461 aa14.08□□□□□ -0.16
SF3B4-201ENST00000271628 LAPTM4BQ86VI4 370 aa14.08□□□□□ -0.16
SF3B4-201ENST00000271628 ATCAYQ86WG3 371 aa14.08□□□□□ -0.16
SF3B4-201ENST00000271628 STT3BQ8TCJ2 826 aa14.08□□□□□ -0.16
SF3B4-201ENST00000271628 DNAJA4Q8WW22 397 aaPredicted RBP14.08□□□□□ -0.16
SF3B4-201ENST00000271628 RFKQ969G6 155 aa14.08□□□□□ -0.16
SF3B4-201ENST00000271628 TXNDC15Q96J42 360 aa14.08□□□□□ -0.16
SF3B4-201ENST00000271628 CCDC74BQ96LY2 380 aa14.08□□□□□ -0.16
SF3B4-201ENST00000271628 ZNF582Q96NG8 517 aaPredicted RBP14.08□□□□□ -0.16
SF3B4-201ENST00000271628 MRPS18AQ9NVS2 196 aaKnown RBP14.08□□□□□ -0.16
SF3B4-201ENST00000271628 FLRT3Q9NZU0 649 aa14.08□□□□□ -0.16
SF3B4-201ENST00000271628 COL5A1P20908 1838 aaPredicted RBP14.08□□□□□ -0.16
SF3B4-201ENST00000271628 PATE3B3GLJ2 98 aa14.07□□□□□ -0.16
SF3B4-201ENST00000271628 SURF4O15260 269 aa14.07□□□□□ -0.16
SF3B4-201ENST00000271628 GPR143P51810 404 aa14.07□□□□□ -0.16
SF3B4-201ENST00000271628 PSPHP78330 225 aa14.07□□□□□ -0.16
SF3B4-201ENST00000271628 EBPQ15125 230 aaKnown RBP14.07□□□□□ -0.16
SF3B4-201ENST00000271628 PGGHGQ32M88 737 aa14.07□□□□□ -0.16
SF3B4-201ENST00000271628 NKAIN1Q4KMZ8 207 aa14.07□□□□□ -0.16
SF3B4-201ENST00000271628 LINC00114Q6XXX2 140 aa14.07□□□□□ -0.16
SF3B4-201ENST00000271628 GDPGP1Q6ZNW5 385 aa14.07□□□□□ -0.16
SF3B4-201ENST00000271628 COX15Q7KZN9 410 aa14.07□□□□□ -0.16
SF3B4-201ENST00000271628 SLC29A4Q7RTT9 530 aa14.07□□□□□ -0.16
SF3B4-201ENST00000271628 PPP1R3BQ86XI6 285 aa14.07□□□□□ -0.16
SF3B4-201ENST00000271628 PRSS58Q8IYP2 241 aa14.07□□□□□ -0.16
SF3B4-201ENST00000271628 ANKK1Q8NFD2 765 aa14.07□□□□□ -0.16
SF3B4-201ENST00000271628 PFN4Q8NHR9 129 aa14.07□□□□□ -0.16
SF3B4-201ENST00000271628 OR5M11Q96RB7 305 aa14.07□□□□□ -0.16
SF3B4-201ENST00000271628 NUDT9Q9BW91 350 aa14.07□□□□□ -0.16
SF3B4-201ENST00000271628 TAPBPLQ9BX59 468 aa14.07□□□□□ -0.16
SF3B4-201ENST00000271628 OR52D1Q9H346 318 aa14.07□□□□□ -0.16
SF3B4-201ENST00000271628 C20orf141Q9NUB4 165 aa14.07□□□□□ -0.16
SF3B4-201ENST00000271628 TECTAO75443 2155 aa14.07□□□□□ -0.16
SF3B4-201ENST00000271628 LOC110117498-PIK3R3F6TDL0 507 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 M0R296 226 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 ADAM11O75078 769 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 SCG5P05408 212 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 ZGLP1P0C6A0 271 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 MAKP20794 623 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 TBXA2RP21731 343 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 EFNA3P52797 238 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 DEFA1P59665 94 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 DEFA3P59666 94 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 DCDP81605 110 aaKnown RBP14.06□□□□□ -0.16
SF3B4-201ENST00000271628 RAB40BQ12829 278 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 TSTQ16762 297 aaKnown RBP14.06□□□□□ -0.16
SF3B4-201ENST00000271628 SOWAHCQ53LP3 525 aaPredicted RBP14.06□□□□□ -0.16
SF3B4-201ENST00000271628 CADM2Q8N3J6 435 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 TMEM105Q8N8V8 129 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 SAMD8Q96LT4 415 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 GAL3ST4Q96RP7 486 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 GFM1Q96RP9 751 aaKnown RBP14.06□□□□□ -0.16
SF3B4-201ENST00000271628 CCNL2Q96S94 520 aaPredicted RBP14.06□□□□□ -0.16
SF3B4-201ENST00000271628 NUAK2Q9H093 628 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms