RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 WDR90Q96KV7 1748 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 A0A1B0GVI7 797 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 CREBL2O60519 120 aaPredicted RBP11.74□□□□□ -0.53
LIG1-221ENST00000613670 ITGA10O75578 1167 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 RAF1P04049 648 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 ATP5A1P25705 553 aaKnown RBP11.74□□□□□ -0.53
LIG1-221ENST00000613670 DOC2BQ14184 412 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 ZBTB37Q5TC79 503 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 FCRLAQ7L513 359 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 OR2L5Q8NG80 312 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 CNRIP1Q96F85 164 aaPredicted RBP11.74□□□□□ -0.53
LIG1-221ENST00000613670 OR14A2Q96R54 314 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 ACTR6Q9GZN1 396 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 SRA1Q9HD15 236 aaKnown RBP11.74□□□□□ -0.53
LIG1-221ENST00000613670 MKKSQ9NPJ1 570 aaPredicted RBP11.74□□□□□ -0.53
LIG1-221ENST00000613670 SIRT3Q9NTG7 399 aaPredicted RBP11.74□□□□□ -0.53
LIG1-221ENST00000613670 ACSL5Q9ULC5 683 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 ZNF443Q9Y2A4 671 aaPredicted RBP11.74□□□□□ -0.53
LIG1-221ENST00000613670 PPIL1Q9Y3C6 166 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 ATG2BQ96BY7 2078 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 TRABD2BA6NFA1 517 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 PDCD5O14737 125 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 CHP2O43745 196 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 MAS1P04201 325 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 ZNF250P15622 560 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 FPR3P25089 353 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 FGF9P31371 208 aaPredicted RBP11.73□□□□□ -0.53
LIG1-221ENST00000613670 TRHRP34981 398 aaPredicted RBP11.73□□□□□ -0.53
LIG1-221ENST00000613670 CDK3Q00526 305 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 EXOSC2Q13868 293 aaKnown RBP11.73□□□□□ -0.53
LIG1-221ENST00000613670 GRK1Q15835 563 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 FAAP20Q6NZ36 180 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 APOOLQ6UXV4 268 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 ZNF620Q6ZNG0 422 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 MBOAT2Q6ZWT7 520 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 BOLLQ8N9W6 283 aaKnown RBP11.73□□□□□ -0.53
LIG1-221ENST00000613670 PXYLP1Q8TE99 480 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 ABHD1Q96SE0 405 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 ZNF559Q9BR84 538 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 RNF32Q9H0A6 362 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 IGFLR1Q9H665 355 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 SAGE1Q9NXZ1 904 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 GPR34Q9UPC5 381 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 ICKQ9UPZ9 632 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 PLEKHM1Q9Y4G2 1056 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 LRIT2A6NDA9 550 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 ANKRD61A6NGH8 418 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 SURF4O15260 269 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 AGR2O95994 175 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 ZNF888P0CJ79 500 aaPredicted RBP11.73□□□□□ -0.53
LIG1-221ENST00000613670 POLR2CP19387 275 aaPredicted RBP11.73□□□□□ -0.53
LIG1-221ENST00000613670 CXCL3P19876 107 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 BCL6P41182 706 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 DUSP6Q16828 381 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 TCTN1Q2MV58 587 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 GXYLT1Q4G148 440 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 MRPL2Q5T653 305 aaKnown RBP11.73□□□□□ -0.53
LIG1-221ENST00000613670 KIAA1211LQ6NV74 962 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 FAM111BQ6SJ93 734 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 ENPP7Q6UWV6 458 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 ELP4Q96EB1 424 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 RBM18Q96H35 190 aaKnown RBP11.73□□□□□ -0.53
LIG1-221ENST00000613670 DHRS9Q9BPW9 319 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 C19orf43Q9BQ61 176 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 IER3IP1Q9Y5U9 82 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 SCN3AQ9NY46 2000 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 NPC1O15118 1278 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 HIST1H2ABP04908 130 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 ITPKBP27987 946 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 KIAA1024LP59773 190 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 EXOSC7Q15024 291 aaKnown RBP11.73□□□□□ -0.53
LIG1-221ENST00000613670 AGERQ15109 404 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 OR1Q1Q15612 314 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 TCTE1Q5JU00 501 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 HIST3H2AQ7L7L0 130 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 OR52E1Q8NGJ3 308 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 HIST1H2ACQ93077 130 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 TNFRSF13CQ96RJ3 184 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 LGR4Q9BXB1 951 aa11.73□□□□□ -0.53
LIG1-221ENST00000613670 C17orf113A0A1B0GUU1 675 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 A0A1W2PPL8 197 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 ELOA3DA6NLF2 546 aaPredicted RBP11.72□□□□□ -0.53
LIG1-221ENST00000613670 HIDE1A8MVS5 230 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 RAD1O60671 282 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 KLHL18O94889 574 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 SPDEFO95238 335 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 LIMS1P48059 325 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 BTG1P62324 171 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 COL28A1Q2UY09 1125 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 ELOA3BQ3SY89 546 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 AMZ1Q400G9 498 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 ALG10BQ5I7T1 473 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 FAM198BQ6UWH4 519 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 TEX261Q6UWH6 196 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 C3P1Q6ZMU1 363 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 ELOA3Q8NG57 546 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 THEM6Q8WUY1 208 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 PTCHD1Q96NR3 888 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 RAB11FIP5Q9BXF6 653 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 FN3KQ9H479 309 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms