RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 FAM81AQ8TBF8 368 aa9.56□□□□□ -0.88
LIG3-203ENST00000585370 DNAJA4Q8WW22 397 aaPredicted RBP9.56□□□□□ -0.88
LIG3-203ENST00000585370 OSTF1Q92882 214 aa9.56□□□□□ -0.88
LIG3-203ENST00000585370 MYDGFQ969H8 173 aa9.56□□□□□ -0.88
LIG3-203ENST00000585370 NODALQ96S42 347 aa9.56□□□□□ -0.88
LIG3-203ENST00000585370 HHATLQ9HCP6 504 aa9.56□□□□□ -0.88
LIG3-203ENST00000585370 EXOSC3Q9NQT5 275 aaKnown RBP9.56□□□□□ -0.88
LIG3-203ENST00000585370 CLN6Q9NWW5 311 aa9.56□□□□□ -0.88
LIG3-203ENST00000585370 RPS6KB2Q9UBS0 482 aa9.56□□□□□ -0.88
LIG3-203ENST00000585370 CTSFQ9UBX1 484 aa9.56□□□□□ -0.88
LIG3-203ENST00000585370 RNF6Q9Y252 685 aa9.56□□□□□ -0.88
LIG3-203ENST00000585370 DTX4Q9Y2E6 619 aa9.56□□□□□ -0.88
LIG3-203ENST00000585370 NINQ8N4C6 2090 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 NPIPA5A0A0B4J1W7 369 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 SAGE2PA6NJ88 616 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 CLDN24A6NM45 220 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 C9J4A7 227 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 NPIPA7E9PJI5 369 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 H3BN98 237 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 ZNF701M0R085 212 aaPredicted RBP9.55□□□□□ -0.88
LIG3-203ENST00000585370 SCDO00767 359 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 FRS3O43559 492 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 CHP2O43745 196 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 FAM20BO75063 409 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 REM1O75628 298 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 TIAF1O95411 115 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 CSTAP01040 98 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 IGHEP01854 428 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 HMGN1P05114 100 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 NPIPA8P0DM63 369 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 NAGAP17050 411 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 POU1F1P28069 291 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 IL12BP29460 328 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 ACAA2P42765 397 aaKnown RBP9.55□□□□□ -0.88
LIG3-203ENST00000585370 OMPP47874 163 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 RFX3P48380 749 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 IDH2P48735 452 aaKnown RBP9.55□□□□□ -0.88
LIG3-203ENST00000585370 GPR143P51810 404 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 SMSP52788 366 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 CDH15P55291 814 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 COPZ1P61923 177 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 CDK5Q00535 292 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 MVKQ03426 396 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 PRKCDQ05655 676 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 EBPQ15125 230 aaKnown RBP9.55□□□□□ -0.88
LIG3-203ENST00000585370 TGIF1Q15583 401 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 MEDAGQ5VYS4 303 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 C12orf73Q69YU5 71 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 LAIR2Q6ISS4 152 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 MRPL14Q6P1L8 145 aaKnown RBP9.55□□□□□ -0.88
LIG3-203ENST00000585370 ULK3Q6PHR2 472 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 TMEM205Q6UW68 189 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 ISLR2Q6UXK2 745 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 PTCHD4Q6ZW05 846 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 KCTD8Q6ZWB6 473 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 PRICKLE2Q7Z3G6 844 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 CPEB2Q7Z5Q1 589 aaKnown RBP9.55□□□□□ -0.88
LIG3-203ENST00000585370 ZAR1Q86SH2 424 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 SATL1Q86VE3 508 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 PRSS58Q8IYP2 241 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 SPARTQ8N0X7 666 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 ZNF614Q8N883 585 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 ZSCAN1Q8NBB4 408 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 ZNF540Q8NDQ6 660 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 B3GNT7Q8NFL0 401 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 OR8J1Q8NGP2 316 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 NUBPLQ8TB37 319 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 CNIH3Q8TBE1 160 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 TEX47Q8TBZ9 253 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 TMEM239Q8WW34 195 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 CNOT9Q92600 299 aaKnown RBP9.55□□□□□ -0.88
LIG3-203ENST00000585370 VMP1Q96GC9 406 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 LPAR4Q99677 370 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 CTRCQ99895 268 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 WWTR1Q9GZV5 400 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 NXF5Q9H1B4 397 aaKnown RBP9.55□□□□□ -0.88
LIG3-203ENST00000585370 SLC25A19Q9HC21 320 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 DNAJB12Q9NXW2 375 aaKnown RBP9.55□□□□□ -0.88
LIG3-203ENST00000585370 SLC39A1Q9NY26 324 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 SLC7A7Q9UM01 511 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 MED31Q9Y3C7 131 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 SEC16AO15027 2179 aa9.55□□□□□ -0.88
LIG3-203ENST00000585370 MAST4O15021 2626 aa9.54□□□□□ -0.88
LIG3-203ENST00000585370 HECTD1Q9ULT8 2610 aa9.54□□□□□ -0.88
LIG3-203ENST00000585370 RELNP78509 3460 aa9.54□□□□□ -0.88
LIG3-203ENST00000585370 NUP210LQ5VU65 1888 aa9.54□□□□□ -0.88
LIG3-203ENST00000585370 A0A0B4J2E0 115 aa9.54□□□□□ -0.88
LIG3-203ENST00000585370 CENPVL1A0A0U1RR11 272 aa9.54□□□□□ -0.88
LIG3-203ENST00000585370 A0A1B0GX12 115 aa9.54□□□□□ -0.88
LIG3-203ENST00000585370 EFCAB10A6NFE3 127 aa9.54□□□□□ -0.88
LIG3-203ENST00000585370 SNTNA6NMZ2 147 aa9.54□□□□□ -0.88
LIG3-203ENST00000585370 CLCA1A8K7I4 914 aa9.54□□□□□ -0.88
LIG3-203ENST00000585370 B8ZZF3 427 aa9.54□□□□□ -0.88
LIG3-203ENST00000585370 PTGES3LE9PB15 166 aa9.54□□□□□ -0.88
LIG3-203ENST00000585370 J3QKU1 62 aa9.54□□□□□ -0.88
LIG3-203ENST00000585370 GTPBP1O00178 669 aaKnown RBP9.54□□□□□ -0.88
LIG3-203ENST00000585370 AGRPO00253 132 aa9.54□□□□□ -0.88
LIG3-203ENST00000585370 RGS10O43665 173 aa9.54□□□□□ -0.88
LIG3-203ENST00000585370 EIF4E2O60573 245 aaKnown RBP9.54□□□□□ -0.88
LIG3-203ENST00000585370 TSPAN2O60636 221 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms