RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 RGS9O75916 674 aaPredicted RBP12.29□□□□□ -0.44
VPS4A-204ENST00000566354 SLC6A1P30531 599 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 POLR2GP62487 172 aaKnown RBP eCLIP12.29□□□□□ -0.44
VPS4A-204ENST00000566354 ZNF750Q32MQ0 723 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 PLEKHM3Q6ZWE6 761 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 MBOAT2Q6ZWT7 520 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 GLRX5Q86SX6 157 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 LRRC28Q86X40 367 aaPredicted RBP12.29□□□□□ -0.44
VPS4A-204ENST00000566354 NRMQ8IXM6 262 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 ACOT4Q8N9L9 421 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 BBS1Q8NFJ9 593 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 OR5M3Q8NGP4 307 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 OR2A1Q8NGT9 310 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 KCTD12Q96CX2 325 aaKnown RBP12.29□□□□□ -0.44
VPS4A-204ENST00000566354 MS4A6EQ96DS6 147 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 GFM1Q96RP9 751 aaKnown RBP12.29□□□□□ -0.44
VPS4A-204ENST00000566354 HDHD2Q9H0R4 259 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 FGF22Q9HCT0 170 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 ATP13A2Q9NQ11 1180 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 PRDM7Q9NQW5 492 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 CYSLTR2Q9NS75 346 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 ACSL5Q9ULC5 683 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 SLC17A4Q9Y2C5 497 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 CHST2Q9Y4C5 530 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 EML5Q05BV3 1969 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 A0A0X1KG70 313 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 GSAPA4D1B5 854 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 TRIM77I1YAP6 450 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 J3QRE1 110 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 ERI3O43414 337 aaKnown RBP12.29□□□□□ -0.44
VPS4A-204ENST00000566354 AKR7A2O43488 359 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 RNF13O43567 381 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 NTN1O95631 604 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 ATP5A1P25705 553 aaKnown RBP12.29□□□□□ -0.44
VPS4A-204ENST00000566354 TALDO1P37837 337 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 GPR4P46093 362 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 RGS8P57771 180 aaPredicted RBP12.29□□□□□ -0.44
VPS4A-204ENST00000566354 DUSP2Q05923 314 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 IDNKQ5T6J7 187 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 HBMQ6B0K9 141 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 LAMTOR1Q6IAA8 161 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 SLC48A1Q6P1K1 146 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 ABHD17CQ6PCB6 329 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 C16orf62Q7Z3J2 963 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 CPOQ8IVL8 374 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 GID4Q8IVV7 300 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 NUP43Q8NFH3 380 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 OR4M2Q8NGB6 313 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 OR8K5Q8NH50 307 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 LHFPL5Q8TAF8 219 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 RBM14Q96PK6 669 aaKnown RBP12.29□□□□□ -0.44
VPS4A-204ENST00000566354 FERD3LQ96RJ6 166 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 GALNT9Q9HCQ5 603 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 PPP1R14DQ9NXH3 145 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 BABAM2Q9NXR7 383 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 CES1P1Q9UKY3 287 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 PLEKHM1Q9Y4G2 1056 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 HSPB11Q9Y547 144 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 CSNK1G3Q9Y6M4 447 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 WDFY4Q6ZS81 3184 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 PLOD3O60568 738 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 AIFM1O95831 613 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 C8orf89P0DMQ9 161 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 HK1P19367 917 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 BCL6P41182 706 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 CXCL12P48061 93 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 GPR176Q14439 515 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 ANGPT1Q15389 498 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 TCEA2Q15560 299 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 METTL11BQ5VVY1 283 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 LYPD8Q6UX82 237 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 GDF7Q7Z4P5 450 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 ACBD7Q8N6N7 88 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 ELP4Q96EB1 424 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 SLC41A3Q96GZ6 507 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 MCHR1Q99705 422 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 THAP7Q9BT49 309 aaPredicted RBP12.28□□□□□ -0.44
VPS4A-204ENST00000566354 KRCC1Q9NPI7 259 aaPredicted RBP12.28□□□□□ -0.44
VPS4A-204ENST00000566354 HINT3Q9NQE9 182 aaKnown RBP12.28□□□□□ -0.44
VPS4A-204ENST00000566354 K7ESF4 209 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 PAICSP22234 425 aaKnown RBP12.28□□□□□ -0.44
VPS4A-204ENST00000566354 F8A1P23610 371 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 AKT2P31751 481 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 TSPAN7P41732 249 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 MC3RP41968 323 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 OR3A3P47888 321 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 RFX3P48380 749 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 RAB28P51157 221 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 CCR5P51681 352 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 DMWDQ09019 674 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 CDC73Q6P1J9 531 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 SMARCD3Q6STE5 483 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 ENPP7Q6UWV6 458 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 ZNF704Q6ZNC4 412 aaPredicted RBP12.28□□□□□ -0.44
VPS4A-204ENST00000566354 CXXC5Q7LFL8 322 aaKnown RBP12.28□□□□□ -0.44
VPS4A-204ENST00000566354 SIRT6Q8N6T7 355 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 OR2L5Q8NG80 312 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 OR51G2Q8NGK0 314 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 RFT1Q96AA3 541 aa12.28□□□□□ -0.44
VPS4A-204ENST00000566354 ACTRT3Q9BYD9 372 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms