RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 RPS27P42677 84 aaKnown RBP13.83□□□□□ -0.2
CUX1-215ENST00000556210 OR1D4P47884 311 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 ZNF81P51508 661 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 PPP1CAP62136 330 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 PSPHP78330 225 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 SSX1Q16384 188 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 PGGHGQ32M88 737 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 POMGNT2Q8NAT1 580 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 RSC1A1Q92681 617 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 NRSN2Q9GZP1 204 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 HINT3Q9NQE9 182 aaKnown RBP13.83□□□□□ -0.2
CUX1-215ENST00000556210 SESN1Q9Y6P5 492 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 FGF17O60258 216 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 GBX2P52951 348 aaPredicted RBP13.82□□□□□ -0.2
CUX1-215ENST00000556210 RPL6Q02878 288 aaKnown RBP13.82□□□□□ -0.2
CUX1-215ENST00000556210 DEFB133Q30KQ1 61 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 HES5Q5TA89 166 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 BCL2L15Q5TBC7 163 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 ETFBKMTQ8IXQ9 262 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 TOMM5Q8N4H5 51 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 DNAJC5GQ8N7S2 189 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 GAL3ST3Q96A11 431 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 HS6ST2Q96MM7 605 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 TRIM2Q9C040 744 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 SIRT3Q9NTG7 399 aaPredicted RBP13.82□□□□□ -0.2
CUX1-215ENST00000556210 RASD1Q9Y272 281 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 MED12Q93074 2177 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 CPED1A4D0V7 1026 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 EIF1AYO14602 144 aaKnown RBP13.82□□□□□ -0.2
CUX1-215ENST00000556210 CDC40O60508 579 aaKnown RBP eCLIP13.82□□□□□ -0.2
CUX1-215ENST00000556210 TSPAN31Q12999 210 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 C5orf34Q96MH7 638 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 CA14Q9ULX7 337 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 GABRPO00591 440 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 XKRYO14609 159 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 F13BP05160 661 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 ACP2P11117 423 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 HK1P19367 917 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 PKLRP30613 574 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 OR13C5Q8NGS8 318 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 OR6N2Q8NGY6 317 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 TM9SF4Q92544 642 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 CCDC120Q96HB5 630 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 UBQLN3Q9H347 655 aa13.82□□□□□ -0.2
CUX1-215ENST00000556210 POLMQ9NP87 494 aaPredicted RBP13.82□□□□□ -0.2
CUX1-215ENST00000556210 SIDT1Q9NXL6 827 aaKnown RBP13.82□□□□□ -0.2
CUX1-215ENST00000556210 MRPS2Q9Y399 296 aaKnown RBP13.82□□□□□ -0.2
CUX1-215ENST00000556210 MLLT11Q13015 90 aaPredicted RBP13.81□□□□□ -0.2
CUX1-215ENST00000556210 FGFBP1Q14512 234 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 MFSD12Q6NUT3 480 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 ESPNLQ6ZVH7 1005 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 UBE3DQ7Z6J8 389 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 FAM109AQ8N4B1 249 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 ST6GAL2Q96JF0 529 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 CDCA4Q9BXL8 241 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 TCF7L1Q9HCS4 588 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 CENPMQ9NSP4 180 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 B4DXG7 233 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 AKR7A2O43488 359 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 OR3A3P47888 321 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 TIMM29Q9BSF4 260 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 DPCDQ9BVM2 203 aaPredicted RBP13.81□□□□□ -0.2
CUX1-215ENST00000556210 SLC38A1Q9H2H9 487 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 ISG20L2Q9H9L3 353 aaKnown RBP13.81□□□□□ -0.2
CUX1-215ENST00000556210 NANSQ9NR45 359 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 TBC1D24Q9ULP9 559 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 CEP250Q9BV73 2442 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 SDK2Q58EX2 2172 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 A0A0B4J203 849 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 AGR2O95994 175 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 IL1AP01583 271 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 PRKACBP22694 351 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 STOMP27105 288 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 IL12BP29460 328 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 PDE7AQ13946 482 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 RUNX2Q13950 521 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 ZNF767PQ75MW2 155 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 OR4N2Q8NGD1 307 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 SLC37A2Q8TED4 501 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 TBL1XR1Q9BZK7 514 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 GALNT9Q9HCQ5 603 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 FTSJ1Q9UET6 329 aa13.81□□□□□ -0.2
CUX1-215ENST00000556210 A0A1W2PRQ8 180 aa13.8□□□□□ -0.2
CUX1-215ENST00000556210 CTSVO60911 334 aa13.8□□□□□ -0.2
CUX1-215ENST00000556210 C4BPBP20851 252 aa13.8□□□□□ -0.2
CUX1-215ENST00000556210 MAOAP21397 527 aa13.8□□□□□ -0.2
CUX1-215ENST00000556210 CTHP32929 405 aa13.8□□□□□ -0.2
CUX1-215ENST00000556210 RAB40BQ12829 278 aa13.8□□□□□ -0.2
CUX1-215ENST00000556210 TSEN54Q7Z6J9 526 aaKnown RBP13.8□□□□□ -0.2
CUX1-215ENST00000556210 PLCZ1Q86YW0 608 aa13.8□□□□□ -0.2
CUX1-215ENST00000556210 OR4C15Q8NGM1 316 aa13.8□□□□□ -0.2
CUX1-215ENST00000556210 ADOQ96SZ5 270 aa13.8□□□□□ -0.2
CUX1-215ENST00000556210 POLDIP3Q9BY77 421 aaKnown RBP13.8□□□□□ -0.2
CUX1-215ENST00000556210 PRDM7Q9NQW5 492 aa13.8□□□□□ -0.2
CUX1-215ENST00000556210 FBXL4Q9UKA2 621 aa13.8□□□□□ -0.2
CUX1-215ENST00000556210 MGAT4AQ9UM21 535 aa13.8□□□□□ -0.2
CUX1-215ENST00000556210 DICER1Q9UPY3 1922 aaKnown RBP13.8□□□□□ -0.2
CUX1-215ENST00000556210 TSC2P49815 1807 aa13.8□□□□□ -0.2
CUX1-215ENST00000556210 CASC3O15234 703 aaKnown RBP13.8□□□□□ -0.2
CUX1-215ENST00000556210 AP2S1P53680 142 aaPredicted RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms