RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 NUFIP2Q7Z417 695 aaKnown RBP7.54□□□□□ -1.2
USP28-215ENST00000545608 R3HCC1LQ7Z5L2 792 aaKnown RBP7.54□□□□□ -1.2
USP28-215ENST00000545608 PRIMA1Q86XR5 153 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 EIF1ADQ8N9N8 165 aaKnown RBP7.54□□□□□ -1.2
USP28-215ENST00000545608 OR2W6PQ8NHA6 318 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 FBXO27Q8NI29 283 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 PHOSPHO1Q8TCT1 267 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 AGR3Q8TD06 166 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 ABHD3Q8WU67 409 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 CHMP6Q96FZ7 201 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 C3orf30Q96M34 536 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 STACQ99469 402 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 TMEM204Q9BSN7 226 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 MECRQ9BV79 373 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 SRXN1Q9BYN0 137 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 FAM107BQ9H098 131 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 CXorf36Q9H7Y0 433 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 PPCSQ9HAB8 311 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 HHATLQ9HCP6 504 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 DUSP22Q9NRW4 184 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 CARD8Q9Y2G2 431 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 TMA7Q9Y2S6 64 aaKnown RBP7.54□□□□□ -1.2
USP28-215ENST00000545608 SNX8Q9Y5X2 465 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 PRR14LQ5THK1 2151 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 USF3Q68DE3 2245 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 MAP1AP78559 2803 aaPredicted RBP7.53□□□□□ -1.2
USP28-215ENST00000545608 KIAA1324LA8MWY0 1029 aaPredicted RBP7.53□□□□□ -1.2
USP28-215ENST00000545608 TMEM114B3SHH9 223 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 HS3ST1O14792 307 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 SPAG7O75391 227 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 GCM2O75603 506 aaPredicted RBP7.53□□□□□ -1.2
USP28-215ENST00000545608 HSPA4LO95757 839 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 C6orf47O95873 294 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 TUBBP07437 444 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 PAX1P15863 534 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 ATP6V1C1P21283 382 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 ME2P23368 584 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 PCSK6P29122 969 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 HPCAL1P37235 193 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 EIF1P41567 113 aaKnown RBP7.53□□□□□ -1.2
USP28-215ENST00000545608 CCT3P49368 545 aaKnown RBP7.53□□□□□ -1.2
USP28-215ENST00000545608 P2RX1P51575 399 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 NR1H2P55055 460 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 CAPRIN1Q14444 709 aaKnown RBP7.53□□□□□ -1.2
USP28-215ENST00000545608 PTGR1Q14914 329 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 ZNF239Q16600 458 aaKnown RBP7.53□□□□□ -1.2
USP28-215ENST00000545608 TMEM176BQ3YBM2 270 aaPredicted RBP7.53□□□□□ -1.2
USP28-215ENST00000545608 XKR7Q5GH72 579 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 C6orf136Q5SQH8 315 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 DCST2Q5T1A1 773 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.53□□□□□ -1.2
USP28-215ENST00000545608 IL23RQ5VWK5 629 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 GTF2IRD2BQ6EKJ0 949 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 TFAP2EQ6VUC0 442 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 ZCCHC23Q6ZST2 131 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 GTF2IRD2Q86UP8 949 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 STK32CQ86UX6 486 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 TUSC5Q8IXB3 177 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 GABRG1Q8N1C3 465 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 KRTCAP2Q8N6L1 136 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 ZNF611Q8N823 705 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 BANPQ8N9N5 519 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 ATP6V1C2Q8NEY4 427 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 LILRB1Q8NHL6 650 aaPredicted RBP7.53□□□□□ -1.2
USP28-215ENST00000545608 PSMA8Q8TAA3 256 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 RAB3IL1Q8TBN0 382 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 GPR119Q8TDV5 335 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 ADAMTS15Q8TE58 950 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 RNF128Q8TEB7 428 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 TMEM171Q8WVE6 324 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 OR5P2Q8WZ92 322 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 AKAP1Q92667 903 aaKnown RBP eCLIP7.53□□□□□ -1.2
USP28-215ENST00000545608 S100PBPQ96BU1 408 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 COQ8BQ96D53 544 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 APOPT1Q96IL0 206 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 PPP3R2Q96LZ3 170 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 C1orf50Q9BV19 199 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 ACTRT3Q9BYD9 372 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 OR10A4Q9H209 315 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 COQ10BQ9H8M1 238 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 ANKZF1Q9H8Y5 726 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 L2HGDHQ9H9P8 463 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 FANCFQ9NPI8 374 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 ZNF701Q9NV72 531 aaPredicted RBP7.53□□□□□ -1.2
USP28-215ENST00000545608 GPATCH2Q9NW75 528 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 MKS1Q9NXB0 559 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.53□□□□□ -1.2
USP28-215ENST00000545608 SLC17A7Q9P2U7 560 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 ICAM5Q9UMF0 924 aa7.53□□□□□ -1.2
USP28-215ENST00000545608 DSCAMO60469 2012 aa7.52□□□□□ -1.2
USP28-215ENST00000545608 IGHV3-15A0A0B4J1V0 119 aa7.52□□□□□ -1.21
USP28-215ENST00000545608 INAFM1C9JVW0 142 aa7.52□□□□□ -1.21
USP28-215ENST00000545608 NPIPB9F8W1W9 429 aa7.52□□□□□ -1.21
USP28-215ENST00000545608 GTPBP1O00178 669 aaKnown RBP7.52□□□□□ -1.21
USP28-215ENST00000545608 PRKD3O94806 890 aa7.52□□□□□ -1.21
USP28-215ENST00000545608 NUDT14O95848 222 aa7.52□□□□□ -1.21
USP28-215ENST00000545608 PABPC4LP0CB38 370 aaKnown RBP7.52□□□□□ -1.21
USP28-215ENST00000545608 H2AFXP16104 143 aaPredicted RBP7.52□□□□□ -1.21
USP28-215ENST00000545608 PRKCAP17252 672 aa7.52□□□□□ -1.21
USP28-215ENST00000545608 DDX5P17844 614 aaKnown RBP7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms