RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 ADAP2Q9NPF8 381 aa11.61□□□□□ -0.55
RNF4-222ENST00000541204 MED17Q9NVC6 651 aa11.61□□□□□ -0.55
RNF4-222ENST00000541204 CPNE7Q9UBL6 633 aa11.61□□□□□ -0.55
RNF4-222ENST00000541204 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 H0YGG7 62 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 J3QRE1 110 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 CTSBP07858 339 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 ZGLP1P0C6A0 271 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 PAICSP22234 425 aaKnown RBP11.6□□□□□ -0.55
RNF4-222ENST00000541204 SHC1P29353 583 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 SLC6A1P30531 599 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 PRKAR1BP31321 381 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 RFX3P48380 749 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 PPM1FP49593 454 aaPredicted RBP11.6□□□□□ -0.55
RNF4-222ENST00000541204 ARF3P61204 181 aaPredicted RBP11.6□□□□□ -0.55
RNF4-222ENST00000541204 TNFRSF17Q02223 184 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 KIR2DS3Q14952 304 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 SUZ12Q15022 739 aaKnown RBP11.6□□□□□ -0.55
RNF4-222ENST00000541204 FAM209AQ5JX71 171 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 TMEM99Q8N816 258 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 CREB3L1Q96BA8 519 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 GIMAP5Q96F15 307 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 TOE1Q96GM8 510 aaKnown RBP11.6□□□□□ -0.55
RNF4-222ENST00000541204 C10orf90Q96M02 699 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 TIMP4Q99727 224 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 THAP7Q9BT49 309 aaPredicted RBP11.6□□□□□ -0.55
RNF4-222ENST00000541204 GPR174Q9BXC1 333 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 RBCK1Q9BYM8 510 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 UBQLN3Q9H347 655 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 ZNF576Q9H609 170 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 LYARQ9NX58 379 aaKnown RBP11.6□□□□□ -0.55
RNF4-222ENST00000541204 KCMF1Q9P0J7 381 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 SDK1Q7Z5N4 2213 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 A0A0A6YYJ9 748 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 CENPVL1A0A0U1RR11 272 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 B3GALT2O43825 422 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 IGHV4-34P06331 123 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 P2RX3P56373 397 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 OR10A3P58181 314 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 ACBD7Q8N6N7 88 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 SAMD12Q8N8I0 201 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 TMEM52Q8NDY8 209 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 OR4K14Q8NGD5 310 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 OR5M3Q8NGP4 307 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 SLC37A2Q8TED4 501 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 ACOT12Q8WYK0 555 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 RERGQ96A58 199 aaPredicted RBP11.6□□□□□ -0.55
RNF4-222ENST00000541204 HCAR1Q9BXC0 346 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 DPH1Q9BZG8 443 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 ENKD1Q9H0I2 346 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 KCNN2Q9H2S1 579 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 ENAMQ9NRM1 1142 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 BABAM2Q9NXR7 383 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 NLGN3Q9NZ94 848 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 PCOLCE2Q9UKZ9 415 aa11.6□□□□□ -0.55
RNF4-222ENST00000541204 TSC22D2O75157 780 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 IFI30P13284 250 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 MTNR1BP49286 362 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 SRP9P49458 86 aaKnown RBP11.59□□□□□ -0.55
RNF4-222ENST00000541204 ATP12AP54707 1039 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 VSX2P58304 361 aaPredicted RBP11.59□□□□□ -0.55
RNF4-222ENST00000541204 SHC2P98077 582 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 GPR68Q15743 365 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 PUS10Q3MIT2 529 aaKnown RBP11.59□□□□□ -0.55
RNF4-222ENST00000541204 BCL2L15Q5TBC7 163 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 FAM205BPQ63HN1 556 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 HBMQ6B0K9 141 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 FRRS1Q6ZNA5 592 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 OR5H6Q8NGV6 325 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 RFT1Q96AA3 541 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 ZFYVE21Q9BQ24 234 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 ACTRT3Q9BYD9 372 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 TPSD1Q9BZJ3 242 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 ABCG5Q9H222 651 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 CYSLTR2Q9NS75 346 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 CALML5Q9NZT1 146 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 SLC23A1Q9UHI7 598 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 DAPP1Q9UN19 280 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 ZNF443Q9Y2A4 671 aaPredicted RBP11.59□□□□□ -0.55
RNF4-222ENST00000541204 A0A0C4DFX4 3053 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 TRAV6A0A075B6T7 132 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 NPIPA5A0A0B4J1W7 369 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 B4DGG1 531 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 E9PI62 339 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 NPIPA7E9PJI5 369 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 REM1O75628 298 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 TNFP01375 233 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 HMGN1P05114 100 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 HOXC4P09017 264 aaPredicted RBP11.59□□□□□ -0.55
RNF4-222ENST00000541204 NPIPA8P0DM63 369 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 TALDO1P37837 337 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 KLHL12Q53G59 568 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 CEP78Q5JTW2 689 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 ARL9Q6T311 187 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 CREB3L2Q70SY1 520 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 KRT74Q7RTS7 529 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 LRRC28Q86X40 367 aaPredicted RBP11.59□□□□□ -0.55
RNF4-222ENST00000541204 ASB12Q8WXK4 309 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 PHF21AQ96BD5 680 aa11.59□□□□□ -0.55
RNF4-222ENST00000541204 UBL7Q96S82 380 aaPredicted RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms