RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 FLVCR1-AS1Q8TAF5 88 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 AKAP1Q92667 903 aaKnown RBP eCLIP17.84■□□□□ 0.45
VPS28-213ENST00000530983 RFT1Q96AA3 541 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 BPIFA2Q96DR5 249 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 NDC1Q9BTX1 674 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 IFT27Q9BW83 186 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 INPP5EQ9NRR6 644 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 SATB2Q9UPW6 733 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 SIGLEC7Q9Y286 467 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 SLC22A31A6NKX4 558 aa17.83■□□□□ 0.45
VPS28-213ENST00000530983 PLRG1O43660 514 aaKnown RBP17.83■□□□□ 0.45
VPS28-213ENST00000530983 CLUP10909 449 aa17.83■□□□□ 0.45
VPS28-213ENST00000530983 AK4P27144 223 aaPredicted RBP17.83■□□□□ 0.45
VPS28-213ENST00000530983 NDUFS1P28331 727 aa17.83■□□□□ 0.45
VPS28-213ENST00000530983 UQCRC1P31930 480 aa17.83■□□□□ 0.45
VPS28-213ENST00000530983 NUDT1P36639 197 aa17.83■□□□□ 0.45
VPS28-213ENST00000530983 SLC16A1P53985 500 aa17.83■□□□□ 0.45
VPS28-213ENST00000530983 RPS7P62081 194 aaKnown RBP17.83■□□□□ 0.45
VPS28-213ENST00000530983 SHC2P98077 582 aa17.83■□□□□ 0.45
VPS28-213ENST00000530983 PLAURQ03405 335 aa17.83■□□□□ 0.45
VPS28-213ENST00000530983 MAB21L1Q13394 359 aa17.83■□□□□ 0.45
VPS28-213ENST00000530983 ZNF776Q68DI1 518 aaPredicted RBP17.83■□□□□ 0.45
VPS28-213ENST00000530983 TMPRSS11FQ6ZWK6 438 aa17.83■□□□□ 0.45
VPS28-213ENST00000530983 SMAP2Q8WU79 429 aaPredicted RBP17.83■□□□□ 0.45
VPS28-213ENST00000530983 OR2M4Q96R27 311 aa17.83■□□□□ 0.45
VPS28-213ENST00000530983 ARPC5LQ9BPX5 153 aa17.83■□□□□ 0.45
VPS28-213ENST00000530983 PLA2G2FQ9BZM2 168 aa17.83■□□□□ 0.45
VPS28-213ENST00000530983 SLC6A17Q9H1V8 727 aa17.83■□□□□ 0.45
VPS28-213ENST00000530983 OR51V1Q9H2C8 321 aa17.83■□□□□ 0.45
VPS28-213ENST00000530983 ZNF624Q9P2J8 865 aaPredicted RBP17.83■□□□□ 0.45
VPS28-213ENST00000530983 SLC22A7Q9Y694 548 aa17.83■□□□□ 0.45
VPS28-213ENST00000530983 FAM86C2PA6NEL3 165 aa17.83■□□□□ 0.44
VPS28-213ENST00000530983 NOS1APO75052 506 aaPredicted RBP17.83■□□□□ 0.44
VPS28-213ENST00000530983 SC5DO75845 299 aa17.83■□□□□ 0.44
VPS28-213ENST00000530983 RCBTB2O95199 551 aa17.83■□□□□ 0.44
VPS28-213ENST00000530983 APODP05090 189 aa17.83■□□□□ 0.44
VPS28-213ENST00000530983 CD53P19397 219 aa17.83■□□□□ 0.44
VPS28-213ENST00000530983 NPR2P20594 1047 aa17.83■□□□□ 0.44
VPS28-213ENST00000530983 BTCP35070 178 aa17.83■□□□□ 0.44
VPS28-213ENST00000530983 PITPNBP48739 271 aa17.83■□□□□ 0.44
VPS28-213ENST00000530983 SLC3A1Q07837 685 aa17.83■□□□□ 0.44
VPS28-213ENST00000530983 RPTNQ6XPR3 784 aa17.83■□□□□ 0.44
VPS28-213ENST00000530983 CREB3L2Q70SY1 520 aa17.83■□□□□ 0.44
VPS28-213ENST00000530983 ZNF767PQ75MW2 155 aa17.83■□□□□ 0.44
VPS28-213ENST00000530983 CEACAM19Q7Z692 300 aa17.83■□□□□ 0.44
VPS28-213ENST00000530983 BPHLQ86WA6 291 aaPredicted RBP17.83■□□□□ 0.44
VPS28-213ENST00000530983 GPR135Q8IZ08 494 aa17.83■□□□□ 0.44
VPS28-213ENST00000530983 C4orf36Q96KX1 117 aa17.83■□□□□ 0.44
VPS28-213ENST00000530983 ABCG5Q9H222 651 aa17.83■□□□□ 0.44
VPS28-213ENST00000530983 SRMSQ9H3Y6 488 aa17.83■□□□□ 0.44
VPS28-213ENST00000530983 ADGRL4Q9HBW9 690 aa17.83■□□□□ 0.44
VPS28-213ENST00000530983 MEPEQ9NQ76 525 aaPredicted RBP17.83■□□□□ 0.44
VPS28-213ENST00000530983 GDE1Q9NZC3 331 aa17.83■□□□□ 0.44
VPS28-213ENST00000530983 FBXL4Q9UKA2 621 aa17.83■□□□□ 0.44
VPS28-213ENST00000530983 TRAV27A0A087WT01 109 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 LEUTXA8MZ59 168 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 SLC31A1O15431 190 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 B3GALT2O43825 422 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 SBK2P0C263 348 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 LAMP2P13473 410 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 NAT1P18440 290 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 SLC2A5P22732 501 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 TLX1P31314 330 aaPredicted RBP17.82■□□□□ 0.44
VPS28-213ENST00000530983 BTG1P62324 171 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 ZNF85Q03923 595 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 RPL13AP3Q6NVV1 102 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 PXKQ7Z7A4 578 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 GPALPP1Q8IXQ4 340 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 DNAJC5GQ8N7S2 189 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 ABHD4Q8TB40 342 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 PGLYRP3Q96LB9 341 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 ABHD1Q96SE0 405 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 FOLH1BQ9HBA9 442 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 TEKT2Q9UIF3 430 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 HSPB11Q9Y547 144 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 ZNF860A6NHJ4 632 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 LDB3O75112 727 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 RFPL3O75679 317 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 SAGP10523 405 aaPredicted RBP17.82■□□□□ 0.44
VPS28-213ENST00000530983 HK1P19367 917 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 M6PRP20645 277 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 ACSL1P33121 698 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 SEC13P55735 322 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 ESCO2Q56NI9 601 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 TPRA1Q86W33 373 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 TMEFF1Q8IYR6 380 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 KCNN3Q9UGI6 736 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 ATG2AQ2TAZ0 1938 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 DOCK8Q8NF50 2099 aa17.82■□□□□ 0.44
VPS28-213ENST00000530983 TRBV23OR9-2A0A075B6M9 112 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 A0A0A6YYJ9 748 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 POM121BA6NF01 834 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 EEF1E1O43324 174 aaKnown RBP17.81■□□□□ 0.44
VPS28-213ENST00000530983 FMO6PO60774 539 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 AHCYP23526 432 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 BMP8BP34820 402 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 ADPRHP54922 357 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 OR12D2P58182 307 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 SLC25A35Q3KQZ1 300 aa17.81■□□□□ 0.44
VPS28-213ENST00000530983 FIGNL1Q6PIW4 674 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms