RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 NEIL3Q8TAT5 605 aa13.72□□□□□ -0.21
NUP54-217ENST00000514987 DOK4Q8TEW6 326 aa13.72□□□□□ -0.21
NUP54-217ENST00000514987 VSTM2LQ96N03 204 aa13.72□□□□□ -0.21
NUP54-217ENST00000514987 ZNF285Q96NJ3 590 aa13.72□□□□□ -0.21
NUP54-217ENST00000514987 AGAP4Q96P64 663 aa13.72□□□□□ -0.21
NUP54-217ENST00000514987 CCNL2Q96S94 520 aaPredicted RBP13.72□□□□□ -0.21
NUP54-217ENST00000514987 GDF15Q99988 308 aa13.72□□□□□ -0.21
NUP54-217ENST00000514987 TMED9Q9BVK6 235 aa13.72□□□□□ -0.21
NUP54-217ENST00000514987 CHRNA10Q9GZZ6 450 aa13.72□□□□□ -0.21
NUP54-217ENST00000514987 RERGLQ9H628 205 aa13.72□□□□□ -0.21
NUP54-217ENST00000514987 TBC1D17Q9HA65 648 aa13.72□□□□□ -0.21
NUP54-217ENST00000514987 ATP13A2Q9NQ11 1180 aa13.72□□□□□ -0.21
NUP54-217ENST00000514987 DNAJB12Q9NXW2 375 aaKnown RBP13.72□□□□□ -0.21
NUP54-217ENST00000514987 RPS6KB2Q9UBS0 482 aa13.72□□□□□ -0.21
NUP54-217ENST00000514987 A0A0A6YYC8 382 aaPredicted RBP13.71□□□□□ -0.21
NUP54-217ENST00000514987 FAM183AA6NL82 134 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 SHISA7A6NL88 538 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 NPIPB9F8W1W9 429 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 I3L1I5 382 aaPredicted RBP13.71□□□□□ -0.21
NUP54-217ENST00000514987 RNF13O43567 381 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 SLC19A2O60779 497 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 PPM1BO75688 479 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 CASP3P42574 277 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 ACAA2P42765 397 aaKnown RBP13.71□□□□□ -0.21
NUP54-217ENST00000514987 ATP12AP54707 1039 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 TPTEP56180 551 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 HSD17B7P56937 341 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 OR2B6P58173 313 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 ALG10BQ5I7T1 473 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 TCTE1Q5JU00 501 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 LINC00114Q6XXX2 140 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 DGAT2L6Q6ZPD8 337 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 ZNF761Q86XN6 746 aaPredicted RBP13.71□□□□□ -0.21
NUP54-217ENST00000514987 RAB43Q86YS6 212 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 ZFP41Q8N8Y5 198 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 C7orf57Q8NEG2 295 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 NACC2Q96BF6 587 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 TEAD3Q99594 435 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 NDC1Q9BTX1 674 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 LRRC61Q9BV99 259 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 MIR1-1HGQ9H1L0 117 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 MOV10Q9HCE1 1003 aaKnown RBP13.71□□□□□ -0.21
NUP54-217ENST00000514987 MEPEQ9NQ76 525 aaPredicted RBP13.71□□□□□ -0.21
NUP54-217ENST00000514987 EPHA6Q9UF33 1036 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 NDRG2Q9UN36 371 aaKnown RBP13.71□□□□□ -0.21
NUP54-217ENST00000514987 PLCL2Q9UPR0 1127 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 MYO9BQ13459 2157 aa13.71□□□□□ -0.21
NUP54-217ENST00000514987 CSF2P04141 144 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 PROS1P07225 676 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 RPS5P46782 204 aaKnown RBP13.71□□□□□ -0.22
NUP54-217ENST00000514987 CAPZBP47756 277 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 PLAURQ03405 335 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 CD300CQ08708 224 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 SERTAD2Q14140 314 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 BAK1Q16611 211 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 DEFB110Q30KQ9 67 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 SLC35F1Q5T1Q4 408 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 ZAR1Q86SH2 424 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 SFTPA2Q8IWL1 248 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 CAMKK1Q8N5S9 505 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 ZNF614Q8N883 585 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 GRHL3Q8TE85 626 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 PTP4A1Q93096 173 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 KISS1RQ969F8 398 aaPredicted RBP13.71□□□□□ -0.22
NUP54-217ENST00000514987 ITFG2Q969R8 447 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 KCTD12Q96CX2 325 aaKnown RBP13.71□□□□□ -0.22
NUP54-217ENST00000514987 AHCYL2Q96HN2 611 aaKnown RBP13.71□□□□□ -0.22
NUP54-217ENST00000514987 HDHD5Q9BXW7 423 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 MKKSQ9NPJ1 570 aaPredicted RBP13.71□□□□□ -0.22
NUP54-217ENST00000514987 FLRT3Q9NZU0 649 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 PRODH2Q9UF12 536 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 KLHL21Q9UJP4 597 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 SERTAD3Q9UJW9 196 aa13.71□□□□□ -0.22
NUP54-217ENST00000514987 TMEM131Q92545 1883 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 A0A1W2PQ09 198 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 CCDC182A6NF36 153 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 TMEM221A6NGB7 291 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 GTPBP1O00178 669 aaKnown RBP13.7□□□□□ -0.22
NUP54-217ENST00000514987 HRO43593 1189 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 HCRTR1O43613 425 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 FOXS1O43638 330 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 NDUFB2O95178 105 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 SBK2P0C263 348 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 SLC2A5P22732 501 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 TGM4P49221 684 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 RPS7P62081 194 aaKnown RBP13.7□□□□□ -0.22
NUP54-217ENST00000514987 FUT7Q11130 342 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 RIN1Q13671 783 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.7□□□□□ -0.22
NUP54-217ENST00000514987 KLHL12Q53G59 568 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 PYDC2Q56P42 97 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 THSD4Q6ZMP0 1018 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 ZNF517Q6ZMY9 492 aaPredicted RBP13.7□□□□□ -0.22
NUP54-217ENST00000514987 NRARPQ7Z6K4 114 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 TPRA1Q86W33 373 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 GATAD2AQ86YP4 633 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 UBQLNLQ8IYU4 475 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 ARL14Q8N4G2 192 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 SYT14Q8NB59 555 aa13.7□□□□□ -0.22
NUP54-217ENST00000514987 TSTD1Q8NFU3 115 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms