RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 NPIPA3F8WFD2 350 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 SOCS6O14544 535 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 TSPAN12O95859 305 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 IGLV3-27P01718 113 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 MT-ND4P03905 459 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 ZDHHC11BP0C7U3 371 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 UGT2B10P36537 528 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 LSSP48449 732 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 GP2P55259 537 aaKnown RBP11.85□□□□□ -0.51
USP53-209ENST00000514665 CLDN12P56749 244 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 PRPS1P60891 318 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 LRRC26Q2I0M4 334 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 CHRFAM7AQ494W8 412 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 RAET1LQ5VY80 246 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 TMEM179BQ7Z7N9 219 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 NPRL2Q8WTW4 380 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 RHNO1Q9BSD3 238 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 TIMM29Q9BSF4 260 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 N4BP2Q86UW6 1770 aaPredicted RBP11.85□□□□□ -0.51
USP53-209ENST00000514665 ACOD1A6NK06 481 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 LIPCP11150 499 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 AMY2BP19961 511 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 SFTPDP35247 375 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 P2RY14Q15391 338 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 DEFB133Q30KQ1 61 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 TCTE1Q5JU00 501 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 FBXO46Q6PJ61 603 aaPredicted RBP11.85□□□□□ -0.51
USP53-209ENST00000514665 MBOAT4Q96T53 435 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 PLEKHM1Q9Y4G2 1056 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 OR2A25A4D2G3 310 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 SEC14L5O43304 696 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 PEX11BO96011 259 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 SNRPBP14678 240 aaKnown RBP11.84□□□□□ -0.51
USP53-209ENST00000514665 ZNF16P17020 682 aaPredicted RBP11.84□□□□□ -0.51
USP53-209ENST00000514665 SSTR2P30874 369 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 CASP3P42574 277 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 SERTAD2Q14140 314 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 CRMP1Q14194 572 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 TMEM164Q5U3C3 297 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 FAM205BPQ63HN1 556 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 TMEM184AQ6ZMB5 413 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 PNPLA2Q96AD5 504 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 TNFRSF13CQ96RJ3 184 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 PITHD1Q9GZP4 211 aaPredicted RBP11.84□□□□□ -0.51
USP53-209ENST00000514665 C2orf42Q9NWW7 574 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 SIDT1Q9NXL6 827 aaKnown RBP11.84□□□□□ -0.51
USP53-209ENST00000514665 METTL15A6NJ78 407 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 SLC22A5O76082 557 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 PAHP00439 452 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 BMP1P13497 986 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 ENDOUP21128 410 aaKnown RBP11.84□□□□□ -0.51
USP53-209ENST00000514665 MMP11P24347 488 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 SHC1P29353 583 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 CASRP41180 1078 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 CSNK1G2P78368 415 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 TLE3Q04726 772 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 ZNF767PQ75MW2 155 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 ZNF582Q96NG8 517 aaPredicted RBP11.84□□□□□ -0.51
USP53-209ENST00000514665 TSNAXQ99598 290 aaKnown RBP11.84□□□□□ -0.51
USP53-209ENST00000514665 C1QTNF3Q9BXJ4 246 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 TAS2R8Q9NYW2 309 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 H7C2Y5 167 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 PEX12O00623 359 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 NPC1O15118 1278 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 LILRB3O75022 631 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 ALDOBP05062 364 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 SNU13P55769 128 aaKnown RBP11.84□□□□□ -0.51
USP53-209ENST00000514665 ACTBP60709 375 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 ACTG1P63261 375 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 MRPL58Q14197 206 aaKnown RBP11.84□□□□□ -0.51
USP53-209ENST00000514665 PLXDC1Q8IUK5 500 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 LRRC56Q8IYG6 542 aaPredicted RBP11.84□□□□□ -0.51
USP53-209ENST00000514665 STOML3Q8TAV4 291 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 ELP5Q8TE02 316 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 FAM3CQ92520 227 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 CNOT9Q92600 299 aaKnown RBP11.84□□□□□ -0.51
USP53-209ENST00000514665 AHCTF1Q8WYP5 2266 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 SLC5A10A0PJK1 596 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 GFYI3L273 518 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 SLC16A7O60669 478 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 RAB3DO95716 219 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 C1QAP02745 245 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 SCG5P05408 212 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 OR8G3PP0DMU2 310 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 HNRNPFP52597 415 aaKnown RBP11.84□□□□□ -0.51
USP53-209ENST00000514665 GBX1Q14549 363 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 HENMT1Q5T8I9 393 aaKnown RBP11.84□□□□□ -0.51
USP53-209ENST00000514665 EEF1A1P5Q5VTE0 462 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 CYHR1Q6ZMK1 362 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 ZNF765Q7L2R6 523 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 SFXN5Q8TD22 340 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 NXPE3Q969Y0 559 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 FAM46BQ96A09 425 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 ARSGQ96EG1 525 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 FAM71F1Q96KD3 344 aaPredicted RBP11.84□□□□□ -0.51
USP53-209ENST00000514665 HOXD1Q9GZZ0 328 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 TMEM38AQ9H6F2 299 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 RCE1Q9Y256 329 aa11.84□□□□□ -0.51
USP53-209ENST00000514665 A0A0G2JMP0 313 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 TCRBV5S2A0A599 114 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms