RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 RABEPKQ7Z6M1 372 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 BATF2Q8N1L9 274 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 RNF182Q8N6D2 247 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 OR51G1Q8NGK1 321 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 MGARPQ8TDB4 240 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 DEDD2Q8WXF8 326 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 TBC1D10AQ9BXI6 508 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 POLD4Q9HCU8 107 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 HMG20BQ9P0W2 317 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 ANKMY1Q9P2S6 941 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 MTRRQ9UBK8 725 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 P2RX2Q9UBL9 471 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 ZNF282Q9UDV7 671 aaPredicted RBP1.61□□□□□ -2.15
VPS35-207ENST00000568191 TRIM10Q9UDY6 481 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 ZNF490Q9ULM2 529 aaPredicted RBP1.61□□□□□ -2.15
VPS35-207ENST00000568191 UBQLN1Q9UMX0 589 aaKnown RBP1.61□□□□□ -2.15
VPS35-207ENST00000568191 PLA2G4CQ9UP65 541 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 PLLPQ9Y342 182 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 MAB21L2Q9Y586 359 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 THSD7BQ9C0I4 1608 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 HIVEP2P31629 2446 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 TRBV2A0A0J9YWF9 115 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 PSMB11A5LHX3 300 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 ZNF705EA8MWA4 302 aaPredicted RBP1.6□□□□□ -2.15
VPS35-207ENST00000568191 DDX39AO00148 427 aaKnown RBP1.6□□□□□ -2.15
VPS35-207ENST00000568191 FCN1O00602 326 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 AIREO43918 545 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 NPIPB7O75200 414 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 SPAG7O75391 227 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 PNPP00491 289 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 GSTT2P0CG29 244 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 GSTT2BP0CG30 244 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 COX7A1P24310 79 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 PTPN6P29350 595 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 EPHX2P34913 555 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 C2orf76Q3KRA6 126 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 IL23RQ5VWK5 629 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 ISLR2Q6UXK2 745 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 ERASQ7Z444 233 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 TAF8Q7Z7C8 310 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 C17orf82Q86X59 251 aaPredicted RBP1.6□□□□□ -2.15
VPS35-207ENST00000568191 NRMQ8IXM6 262 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 TPRX1Q8N7U7 411 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 ZSCAN4Q8NAM6 433 aaPredicted RBP1.6□□□□□ -2.15
VPS35-207ENST00000568191 MINDY2Q8NBR6 621 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 OR6X1Q8NH79 312 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 PHF10Q8WUB8 498 aaKnown RBP1.6□□□□□ -2.15
VPS35-207ENST00000568191 ATP6V0A1Q93050 837 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 RPUSD4Q96CM3 377 aaKnown RBP1.6□□□□□ -2.15
VPS35-207ENST00000568191 RIOK1Q9BRS2 568 aaKnown RBP1.6□□□□□ -2.15
VPS35-207ENST00000568191 RNF126Q9BV68 326 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 FTHL17Q9BXU8 183 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 THAP9Q9H5L6 903 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 C1orf123Q9NWV4 160 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 STOX2Q9P2F5 926 aaPredicted RBP1.6□□□□□ -2.15
VPS35-207ENST00000568191 KCNN3Q9UGI6 736 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 CRLS1Q9UJA2 301 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 RIMS3Q9UJD0 308 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 SCN2AQ99250 2005 aa1.6□□□□□ -2.15
VPS35-207ENST00000568191 CFAP73A6NFT4 308 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 FAM74A7A6NL05 159 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 LRRC30A6NM36 301 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 K7N7A8 449 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 RIPK2O43353 540 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 PLEKP08567 350 aaPredicted RBP1.59□□□□□ -2.15
VPS35-207ENST00000568191 ANXA4P09525 319 aaPredicted RBP1.59□□□□□ -2.15
VPS35-207ENST00000568191 RCC1P18754 421 aaPredicted RBP1.59□□□□□ -2.15
VPS35-207ENST00000568191 FUT1P19526 365 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 AQP1P29972 269 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 CYLC1P35663 651 aaPredicted RBP1.59□□□□□ -2.15
VPS35-207ENST00000568191 TFPI2P48307 235 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 LHX2P50458 406 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 PLK1P53350 603 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 SH3BGRP55822 239 aaPredicted RBP1.59□□□□□ -2.15
VPS35-207ENST00000568191 OSTNP61366 133 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 ACTA1P68133 377 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 CSNK1G2P78368 415 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 BDH1Q02338 343 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 CSTF1Q05048 431 aaKnown RBP1.59□□□□□ -2.15
VPS35-207ENST00000568191 UNC119Q13432 240 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 EXOSC2Q13868 293 aaKnown RBP1.59□□□□□ -2.15
VPS35-207ENST00000568191 PDK1Q15118 436 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 CDKN3Q16667 212 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 FAM74A3Q4VXF1 159 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 XKR4Q5GH76 650 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 KPRPQ5T749 579 aaPredicted RBP1.59□□□□□ -2.15
VPS35-207ENST00000568191 PVRIGQ6DKI7 326 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 ETFRF1Q6IPR1 90 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 LANCL3Q6ZV70 420 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 ARMCX2Q7L311 632 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 FAM220AQ7Z4H9 259 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 ABHD12BQ7Z5M8 362 aaPredicted RBP1.59□□□□□ -2.15
VPS35-207ENST00000568191 VRK2Q86Y07 508 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 DUSP18Q8NEJ0 188 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 CNIH3Q8TBE1 160 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 AENQ8WTP8 325 aaKnown RBP1.59□□□□□ -2.15
VPS35-207ENST00000568191 UPRTQ96BW1 309 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 NRIP2Q9BQI9 281 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 CHIAQ9BZP6 476 aa1.59□□□□□ -2.15
VPS35-207ENST00000568191 SLC25A51Q9H1U9 297 aa1.59□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms