RNA–Protein interactions for RNA: ENST00000561436.1

HERC1-215, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 4

Gene HERC1, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-215ENST00000561436 DDX28Q9NUL7 540 aaKnown RBP3.12□□□□□ -1.91
HERC1-215ENST00000561436 KCNN3Q9UGI6 736 aa3.12□□□□□ -1.91
HERC1-215ENST00000561436 FETUBQ9UGM5 382 aa3.12□□□□□ -1.91
HERC1-215ENST00000561436 KIAA1257Q9ULG3 409 aa3.12□□□□□ -1.91
HERC1-215ENST00000561436 TEX264Q9Y6I9 313 aa3.12□□□□□ -1.91
HERC1-215ENST00000561436 RNF215Q9Y6U7 377 aa3.12□□□□□ -1.91
HERC1-215ENST00000561436 MYH8P13535 1937 aa3.12□□□□□ -1.91
HERC1-215ENST00000561436 PTPRJQ12913 1337 aa3.12□□□□□ -1.91
HERC1-215ENST00000561436 ARID2Q68CP9 1835 aa3.12□□□□□ -1.91
HERC1-215ENST00000561436 ANKRD17O75179 2603 aaKnown RBP3.11□□□□□ -1.91
HERC1-215ENST00000561436 LOXHD1Q8IVV2 1947 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 A0A087X002 238 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 PVALEFA0A1B0GWK0 134 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 KRT87PA6NCN2 255 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 YJEFN3A6XGL0 299 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 PP2D1A8MPX8 630 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 MAPK13O15264 365 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 NME2P1O60361 137 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 ANXA9O76027 345 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 DUS4LO95620 317 aaKnown RBP3.11□□□□□ -1.91
HERC1-215ENST00000561436 SLC4A1P02730 911 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 PRB1P04280 392 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 IGHV4-34P06331 123 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 HIST1H2AGP0C0S8 130 aaPredicted RBP3.11□□□□□ -1.91
HERC1-215ENST00000561436 TNNI1P19237 187 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 EDNRAP25101 427 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 GTF2H1P32780 548 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 CAPGP40121 348 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 ACADSBP45954 432 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 ZFP36L2P47974 494 aaKnown RBP3.11□□□□□ -1.91
HERC1-215ENST00000561436 CNN1P51911 297 aaKnown RBP3.11□□□□□ -1.91
HERC1-215ENST00000561436 HERV-K104P63124 156 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 CYP24A1Q07973 514 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 INCA1Q0VD86 236 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 NME3Q13232 169 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 ELAVL3Q14576 367 aaKnown RBP3.11□□□□□ -1.91
HERC1-215ENST00000561436 SNRNP35Q16560 246 aaKnown RBP3.11□□□□□ -1.91
HERC1-215ENST00000561436 CLPPQ16740 277 aaPredicted RBP3.11□□□□□ -1.91
HERC1-215ENST00000561436 HNRNPA1L2Q32P51 320 aaKnown RBP3.11□□□□□ -1.91
HERC1-215ENST00000561436 GPAT3Q53EU6 434 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 C10orf120Q5SQS8 335 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 LCE1FQ5T754 118 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 PRAMEF7Q5VXH5 474 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 CLEC18BQ6UXF7 455 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 DLEU7Q6UYE1 221 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 Q6ZRG5 221 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 CDHR3Q6ZTQ4 885 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 TPGS1Q6ZTW0 290 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 PAQR9Q6ZVX9 377 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 RNF130Q86XS8 419 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.11□□□□□ -1.91
HERC1-215ENST00000561436 ZNF619Q8N2I2 560 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 KDM8Q8N371 416 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 GVQW1Q8N7I0 195 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 TMEM185AQ8NFB2 350 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 OR6C4Q8NGE1 309 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 OR4C6Q8NH72 309 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 KIAA1524Q8TCG1 905 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 DDI1Q8WTU0 396 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 LIPHQ8WWY8 451 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 NAT6Q93015 286 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 HIST1H2ACQ93077 130 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 RAB39BQ96DA2 213 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 TMA16Q96EY4 203 aaKnown RBP3.11□□□□□ -1.91
HERC1-215ENST00000561436 CNRIP1Q96F85 164 aaPredicted RBP3.11□□□□□ -1.91
HERC1-215ENST00000561436 RUNDC3BQ96NL0 473 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 TMEM237Q96Q45 408 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 ALKBH3Q96Q83 286 aaPredicted RBP3.11□□□□□ -1.91
HERC1-215ENST00000561436 RAB40CQ96S21 281 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 CCNL2Q96S94 520 aaPredicted RBP3.11□□□□□ -1.91
HERC1-215ENST00000561436 KCNK16Q96T55 309 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 OMDQ99983 421 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 MRPL45Q9BRJ2 306 aaKnown RBP3.11□□□□□ -1.91
HERC1-215ENST00000561436 MED10Q9BTT4 135 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 TRIM9Q9C026 710 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 XPO4Q9C0E2 1151 aaKnown RBP3.11□□□□□ -1.91
HERC1-215ENST00000561436 ATG10Q9H0Y0 220 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 C1orf21Q9H246 121 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 SLC26A1Q9H2B4 701 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 PLEKHA3Q9HB20 300 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 ANKMY1Q9P2S6 941 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 COPS7AQ9UBW8 275 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 RPH3AQ9Y2J0 694 aaPredicted RBP3.11□□□□□ -1.91
HERC1-215ENST00000561436 MRPS18CQ9Y3D5 142 aaKnown RBP3.11□□□□□ -1.91
HERC1-215ENST00000561436 NLRC5Q86WI3 1866 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 MYH7P12883 1935 aa3.11□□□□□ -1.91
HERC1-215ENST00000561436 OR5H15A6NDH6 313 aa3.1□□□□□ -1.91
HERC1-215ENST00000561436 CFAP73A6NFT4 308 aa3.1□□□□□ -1.91
HERC1-215ENST00000561436 A8MU76 341 aa3.1□□□□□ -1.91
HERC1-215ENST00000561436 WASH3PC4AMC7 463 aa3.1□□□□□ -1.91
HERC1-215ENST00000561436 ARPC1BO15143 372 aaKnown RBP3.1□□□□□ -1.91
HERC1-215ENST00000561436 NVLO15381 856 aaKnown RBP3.1□□□□□ -1.91
HERC1-215ENST00000561436 CFLARO15519 480 aa3.1□□□□□ -1.91
HERC1-215ENST00000561436 ZW10O43264 779 aa3.1□□□□□ -1.91
HERC1-215ENST00000561436 TLX2O43763 284 aaPredicted RBP3.1□□□□□ -1.91
HERC1-215ENST00000561436 IDH3BO43837 385 aa3.1□□□□□ -1.91
HERC1-215ENST00000561436 STX10O60499 249 aa3.1□□□□□ -1.91
HERC1-215ENST00000561436 ZFAND5O76080 213 aa3.1□□□□□ -1.91
HERC1-215ENST00000561436 SYNGR4O95473 234 aa3.1□□□□□ -1.91
HERC1-215ENST00000561436 MT-ATP6P00846 226 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms