RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 TRABD2AQ86V40 505 aa14.51□□□□□ -0.09
VIM-208ENST00000497849 RIBC1Q8N443 379 aaPredicted RBP14.51□□□□□ -0.09
VIM-208ENST00000497849 SGMS2Q8NHU3 365 aa14.51□□□□□ -0.09
VIM-208ENST00000497849 SELENOMQ8WWX9 145 aa14.51□□□□□ -0.09
VIM-208ENST00000497849 CPNE4Q96A23 557 aaPredicted RBP14.51□□□□□ -0.09
VIM-208ENST00000497849 REXO5Q96IC2 774 aaKnown RBP14.51□□□□□ -0.09
VIM-208ENST00000497849 MCM8Q9UJA3 840 aa14.51□□□□□ -0.09
VIM-208ENST00000497849 MRTO4Q9UKD2 239 aaKnown RBP14.51□□□□□ -0.09
VIM-208ENST00000497849 C19orf53Q9UNZ5 99 aaPredicted RBP14.51□□□□□ -0.09
VIM-208ENST00000497849 MGAT4BQ9UQ53 548 aa14.51□□□□□ -0.09
VIM-208ENST00000497849 GXYLT2A0PJZ3 443 aa14.5□□□□□ -0.09
VIM-208ENST00000497849 ALG1L2C9J202 215 aa14.5□□□□□ -0.09
VIM-208ENST00000497849 UPK1AO00322 258 aa14.5□□□□□ -0.09
VIM-208ENST00000497849 KRT4P19013 534 aa14.5□□□□□ -0.09
VIM-208ENST00000497849 COX5AP20674 150 aa14.5□□□□□ -0.09
VIM-208ENST00000497849 MPIP34949 423 aa14.5□□□□□ -0.09
VIM-208ENST00000497849 PDLIM4P50479 330 aa14.5□□□□□ -0.09
VIM-208ENST00000497849 PSMD4P55036 377 aaKnown RBP14.5□□□□□ -0.09
VIM-208ENST00000497849 SLC18A2Q05940 514 aa14.5□□□□□ -0.09
VIM-208ENST00000497849 TECRLQ5HYJ1 363 aa14.5□□□□□ -0.09
VIM-208ENST00000497849 ZNF544Q6NX49 715 aa14.5□□□□□ -0.09
VIM-208ENST00000497849 TMEM107Q6UX40 140 aa14.5□□□□□ -0.09
VIM-208ENST00000497849 TMEM108Q6UXF1 575 aa14.5□□□□□ -0.09
VIM-208ENST00000497849 RPS27LQ71UM5 84 aaKnown RBP14.5□□□□□ -0.09
VIM-208ENST00000497849 SSX8Q7RTT4 187 aa14.5□□□□□ -0.09
VIM-208ENST00000497849 P2RY8Q86VZ1 359 aa14.5□□□□□ -0.09
VIM-208ENST00000497849 ACMSDQ8TDX5 336 aa14.5□□□□□ -0.09
VIM-208ENST00000497849 ACTRT2Q8TDY3 377 aa14.5□□□□□ -0.09
VIM-208ENST00000497849 ZMYND19Q96E35 227 aaPredicted RBP14.5□□□□□ -0.09
VIM-208ENST00000497849 PHF21BQ96EK2 531 aa14.5□□□□□ -0.09
VIM-208ENST00000497849 LMF2Q9BU23 707 aaKnown RBP14.5□□□□□ -0.09
VIM-208ENST00000497849 CXorf36Q9H7Y0 433 aa14.5□□□□□ -0.09
VIM-208ENST00000497849 MED4Q9NPJ6 270 aa14.5□□□□□ -0.09
VIM-208ENST00000497849 GIMAP4Q9NUV9 329 aa14.5□□□□□ -0.09
VIM-208ENST00000497849 OR5H1A6NKK0 313 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 MYO1GB0I1T2 1018 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 NDUFS8O00217 210 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 VENTXO95231 258 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 JUNP05412 331 aaKnown RBP14.49□□□□□ -0.09
VIM-208ENST00000497849 SBK3P0C264 359 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 DHRS4L1P0CG22 281 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 GGT1P19440 569 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 ENPP1P22413 925 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 PTAFRP25105 342 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 CD40P25942 277 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 COMPP49747 757 aaPredicted RBP14.49□□□□□ -0.09
VIM-208ENST00000497849 ZNF41P51814 821 aaPredicted RBP14.49□□□□□ -0.09
VIM-208ENST00000497849 LETMD1Q6P1Q0 360 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 CCDC91Q7Z6B0 441 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 OR2L13Q8N349 312 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 TMEM151AQ8N4L1 468 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 CDYL2Q8N8U2 506 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 GATSQ8NAP1 163 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 OR4C3Q8NH37 302 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 ARL8AQ96BM9 186 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 FOXN4Q96NZ1 517 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 PSD2Q9BQI7 771 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 PIMREGQ9BSJ6 248 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 COQ10BQ9H8M1 238 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 BCO1Q9HAY6 547 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 TMBIM4Q9HC24 238 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 TIGARQ9NQ88 270 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 VPS29Q9UBQ0 182 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 ZNF225Q9UK10 706 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 EMCNQ9ULC0 261 aa14.49□□□□□ -0.09
VIM-208ENST00000497849 IGHV3-15A0A0B4J1V0 119 aa14.48□□□□□ -0.09
VIM-208ENST00000497849 COPEO14579 308 aa14.48□□□□□ -0.09
VIM-208ENST00000497849 SMAD9O15198 467 aaKnown RBP14.48□□□□□ -0.09
VIM-208ENST00000497849 PCDH7O60245 1069 aa14.48□□□□□ -0.09
VIM-208ENST00000497849 OXSR1O95747 527 aaPredicted RBP14.48□□□□□ -0.09
VIM-208ENST00000497849 LINGO3P0C6S8 592 aa14.48□□□□□ -0.09
VIM-208ENST00000497849 CHN1P15882 459 aa14.48□□□□□ -0.09
VIM-208ENST00000497849 GABRA3P34903 492 aa14.48□□□□□ -0.09
VIM-208ENST00000497849 ZNF83P51522 516 aa14.48□□□□□ -0.09
VIM-208ENST00000497849 TCHHL1Q5QJ38 904 aaPredicted RBP14.48□□□□□ -0.09
VIM-208ENST00000497849 KLC3Q6P597 504 aa14.48□□□□□ -0.09
VIM-208ENST00000497849 ZNF433Q8N7K0 673 aaPredicted RBP14.48□□□□□ -0.09
VIM-208ENST00000497849 SEMA6DQ8NFY4 1073 aa14.48□□□□□ -0.09
VIM-208ENST00000497849 FAM110BQ8TC76 370 aa14.48□□□□□ -0.09
VIM-208ENST00000497849 C16orf78Q8WTQ4 265 aa14.48□□□□□ -0.09
VIM-208ENST00000497849 PIK3R3Q92569 461 aa14.48□□□□□ -0.09
VIM-208ENST00000497849 SH3YL1Q96HL8 342 aaPredicted RBP14.48□□□□□ -0.09
VIM-208ENST00000497849 BBS4Q96RK4 519 aa14.48□□□□□ -0.09
VIM-208ENST00000497849 INPP5KQ9BT40 448 aa14.48□□□□□ -0.09
VIM-208ENST00000497849 NMRK1Q9NWW6 199 aa14.48□□□□□ -0.09
VIM-208ENST00000497849 C9JVG2 144 aa14.47□□□□□ -0.09
VIM-208ENST00000497849 STX16-NPEPL1H3BU86 382 aa14.47□□□□□ -0.09
VIM-208ENST00000497849 STX16O14662 325 aa14.47□□□□□ -0.09
VIM-208ENST00000497849 RBP1P09455 135 aa14.47□□□□□ -0.09
VIM-208ENST00000497849 ZNF23P17027 643 aa14.47□□□□□ -0.09
VIM-208ENST00000497849 NCBP2P52298 156 aaKnown RBP eCLIP14.47□□□□□ -0.09
VIM-208ENST00000497849 CHRNB3Q05901 458 aa14.47□□□□□ -0.09
VIM-208ENST00000497849 FOXF1Q12946 379 aa14.47□□□□□ -0.09
VIM-208ENST00000497849 HEPACAMQ14CZ8 416 aa14.47□□□□□ -0.09
VIM-208ENST00000497849 ZNHIT3Q15649 155 aaPredicted RBP14.47□□□□□ -0.09
VIM-208ENST00000497849 TSNAXIP1Q2TAA8 658 aa14.47□□□□□ -0.09
VIM-208ENST00000497849 TNFAIP8L3Q5GJ75 292 aa14.47□□□□□ -0.09
VIM-208ENST00000497849 AGBL2Q5U5Z8 902 aa14.47□□□□□ -0.09
VIM-208ENST00000497849 OR52N5Q8NH56 324 aa14.47□□□□□ -0.09
VIM-208ENST00000497849 ZFAND2BQ8WV99 257 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms