RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 FLRT3Q9NZU0 649 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 TP53TG5Q9Y2B4 290 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 HEATR5AQ86XA9 2040 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 TCRBV3S1A0A5B6 114 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 ANKUB1A6NFN9 424 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 G3V3Y1 287 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 ERVH48-1M5A8F1 160 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 DEAF1O75398 565 aaPredicted RBP9.22□□□□□ -0.93
CD44-207ENST00000425428 GCM2O75603 506 aaPredicted RBP9.22□□□□□ -0.93
CD44-207ENST00000425428 RHCEP18577 417 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 FASP25445 335 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 OR1E2P47887 323 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 DNASE1L1P49184 302 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 MEOX1P50221 254 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 GPR85P60893 370 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 ZNF117Q03924 483 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 ST3GAL3Q11203 375 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 OR5M10Q6IEU7 315 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 AAGABQ6PD74 315 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 C19orf48Q6RUI8 117 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 ENPP6Q6UWR7 440 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 CLIP4Q8N3C7 705 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 CANT1Q8WVQ1 401 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 ST8SIA1Q92185 356 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 CNOT9Q92600 299 aaKnown RBP9.22□□□□□ -0.93
CD44-207ENST00000425428 ZBTB8AQ96BR9 441 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 SCMH1Q96GD3 660 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 ARHGDIGQ99819 225 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 BDH2Q9BUT1 245 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 DENND2DQ9H6A0 471 aaPredicted RBP9.22□□□□□ -0.93
CD44-207ENST00000425428 LDAHQ9H6V9 325 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 SH2D2AQ9NP31 389 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 IL1RAPQ9NPH3 570 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 CCM2LQ9NUG4 571 aaPredicted RBP9.22□□□□□ -0.93
CD44-207ENST00000425428 TAS2R10Q9NYW0 307 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 MED11Q9P086 117 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 TMCC3Q9ULS5 477 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 CHD8Q9HCK8 2581 aa9.21□□□□□ -0.93
CD44-207ENST00000425428 C2orf72A6NCS6 295 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 CLDN24A6NM45 220 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 LINC01387J3KSC0 135 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 M0R3H8 397 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 TFECO14948 347 aaPredicted RBP9.21□□□□□ -0.94
CD44-207ENST00000425428 TPST1O60507 370 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 CDC40O60508 579 aaKnown RBP eCLIP9.21□□□□□ -0.94
CD44-207ENST00000425428 E2F6O75461 281 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 KRT36O76013 467 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 CST1P01037 141 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 FAM87AP0C7U9 286 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 GKN3PP0CG01 181 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 PNMTP11086 282 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 CXCR1P25024 350 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 FKBP2P26885 142 aaKnown RBP9.21□□□□□ -0.94
CD44-207ENST00000425428 DPP4P27487 766 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 IDH2P48735 452 aaKnown RBP9.21□□□□□ -0.94
CD44-207ENST00000425428 ERFP50548 548 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 RNF144AP50876 292 aaPredicted RBP9.21□□□□□ -0.94
CD44-207ENST00000425428 EPS8Q12929 822 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 SKP2Q13309 424 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 GK3PQ14409 553 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 TAF11Q15544 211 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 CD226Q15762 336 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 NRF1Q16656 503 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 BICRALQ6AI39 1079 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 DESI1Q6ICB0 168 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 ULK3Q6PHR2 472 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 APOOLQ6UXV4 268 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.21□□□□□ -0.94
CD44-207ENST00000425428 CATSPER1Q8NEC5 780 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 OR10Q1Q8NGQ4 319 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 OR14L1PQ8NHC6 308 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 ARSGQ96EG1 525 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 FRMD6Q96NE9 622 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 CHID1Q9BWS9 393 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 MFRPQ9BY79 579 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 REEP1Q9H902 201 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 ZNF71Q9NQZ8 489 aaPredicted RBP9.21□□□□□ -0.94
CD44-207ENST00000425428 QPCTLQ9NXS2 382 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 KCNE5Q9UJ90 142 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 RRP15Q9Y3B9 282 aaKnown RBP9.21□□□□□ -0.94
CD44-207ENST00000425428 ENPP4Q9Y6X5 453 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 FREM2Q5SZK8 3169 aa9.21□□□□□ -0.94
CD44-207ENST00000425428 TPRP12270 2363 aaKnown RBP9.2□□□□□ -0.94
CD44-207ENST00000425428 IGLV3-32A0A0A0MS00 114 aa9.2□□□□□ -0.94
CD44-207ENST00000425428 TCRBV5S2A0A599 114 aa9.2□□□□□ -0.94
CD44-207ENST00000425428 TRAPPC13A5PLN9 417 aa9.2□□□□□ -0.94
CD44-207ENST00000425428 ELOA3DA6NLF2 546 aaPredicted RBP9.2□□□□□ -0.94
CD44-207ENST00000425428 CPSF4LA6NMK7 179 aaKnown RBP9.2□□□□□ -0.94
CD44-207ENST00000425428 GJE1A6NN92 205 aa9.2□□□□□ -0.94
CD44-207ENST00000425428 hCG_2039718K7EN88 272 aa9.2□□□□□ -0.94
CD44-207ENST00000425428 FAAHO00519 579 aa9.2□□□□□ -0.94
CD44-207ENST00000425428 BAG2O95816 211 aa9.2□□□□□ -0.94
CD44-207ENST00000425428 THRBP10828 461 aa9.2□□□□□ -0.94
CD44-207ENST00000425428 ZNF24P17028 368 aa9.2□□□□□ -0.94
CD44-207ENST00000425428 HK1P19367 917 aa9.2□□□□□ -0.94
CD44-207ENST00000425428 SRD5A2P31213 254 aa9.2□□□□□ -0.94
CD44-207ENST00000425428 RRM2P31350 389 aa9.2□□□□□ -0.94
CD44-207ENST00000425428 IFNGR2P38484 337 aa9.2□□□□□ -0.94
CD44-207ENST00000425428 SLC1A3P43003 542 aa9.2□□□□□ -0.94
CD44-207ENST00000425428 MAP2K6P52564 334 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms