RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 DESI1Q6ICB0 168 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 PLEKHM3Q6ZWE6 761 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 PRICKLE2Q7Z3G6 844 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 C16orf62Q7Z3J2 963 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 KRT73Q86Y46 540 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 PIK3C3Q8NEB9 887 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 OR1J4Q8NGS1 313 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 SLC38A4Q969I6 547 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 SEPHS2Q99611 448 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 PRSS27Q9BQR3 290 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 SLC39A3Q9BRY0 314 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 HES7Q9BYE0 225 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 TRAPPC4Q9Y296 219 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 PHF3Q92576 2039 aaKnown RBP6.35□□□□□ -1.39
LIMA1-202ENST00000394943 PMS2P2O95744 297 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 RFPL3SP0C7P2 107 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 IL11P20809 199 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 HTR2AP28223 471 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 KRT20P35900 424 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 ART3Q13508 389 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 LARS2Q15031 903 aaKnown RBP6.35□□□□□ -1.39
LIMA1-202ENST00000394943 POU4F3Q15319 338 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 MMEL1Q495T6 779 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 CCNJQ5T5M9 372 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 MRPL2Q5T653 305 aaKnown RBP6.35□□□□□ -1.39
LIMA1-202ENST00000394943 POMZP3Q6PJE2 187 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 C19orf48Q6RUI8 117 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 WDR53Q7Z5U6 358 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-202ENST00000394943 MARCH3Q86UD3 253 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 FAM83FQ8NEG4 500 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-202ENST00000394943 OR4C15Q8NGM1 316 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 SLC25A43Q8WUT9 341 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-202ENST00000394943 RAB8BQ92930 207 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 WDYHV1Q96HA8 205 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 GAL3ST4Q96RP7 486 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 ARMC7Q9H6L4 198 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 JKAMPQ9P055 326 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 CLCF1Q9UBD9 225 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 SAMD4AQ9UPU9 718 aaKnown RBP6.35□□□□□ -1.39
LIMA1-202ENST00000394943 ZNF175Q9Y473 711 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 LOC100653049A0A140TA62 436 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 B2RBV5 119 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 FTCDNL1E5RQL4 147 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 ARPC2O15144 300 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 REM1O75628 298 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 KRT34O76011 436 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 ATP6V1C1P21283 382 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 SLC1A3P43003 542 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 SLC16A1P53985 500 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 CLDN15P56746 228 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 RAC1P63000 192 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 SLC25A3Q00325 362 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 KCNC4Q03721 635 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 WBP2NLQ6ICG8 309 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 FIGNL1Q6PIW4 674 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 LINC00696Q6ZRV3 163 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 GRINAQ7Z429 371 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 SLC43A2Q8N370 569 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 CLIP4Q8N3C7 705 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 MAL2Q969L2 176 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 LIN28AQ9H9Z2 209 aaKnown RBP6.35□□□□□ -1.39
LIMA1-202ENST00000394943 MAN2C1Q9NTJ4 1040 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 PAQR5Q9NXK6 330 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-202ENST00000394943 RPS6KA6Q9UK32 745 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 FBXL2Q9UKC9 423 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 BAG5Q9UL15 447 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 A4GNTQ9UNA3 340 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 OR10H1Q9Y4A9 318 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 IGKV3D-15A0A087WSY6 115 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 MBD3L4A6NDZ8 208 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-202ENST00000394943 MBD3L3A6NE82 208 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-202ENST00000394943 MBD3L5A6NJ08 208 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-202ENST00000394943 H3BNH8 94 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 AIM2O14862 343 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 SLC28A2O43868 658 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 FESP07332 822 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 NR2F1P10589 423 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 ME2P23368 584 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 AGFG1P52594 562 aaKnown RBP6.34□□□□□ -1.39
LIMA1-202ENST00000394943 ZNF133P52736 654 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-202ENST00000394943 ZP4Q12836 540 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 DUSP7Q16829 419 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 ANKDD1AQ495B1 522 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 EEF1A1P5Q5VTE0 462 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 CD300LDQ6UXZ3 194 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 GALNTL5Q7Z4T8 443 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-202ENST00000394943 TSPYL5Q86VY4 417 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-202ENST00000394943 VRK2Q86Y07 508 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 DEFB107AQ8IZN7 70 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 OFCC1Q8IZS5 231 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 MBD3L2Q8NHZ7 208 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-202ENST00000394943 FAM57AQ8TBR7 257 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 XAGE5Q8WWM1 108 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 SLC39A7Q92504 469 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 SNRNP40Q96DI7 357 aaKnown RBP6.34□□□□□ -1.39
LIMA1-202ENST00000394943 KLHDC3Q9BQ90 382 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 TRIM2Q9C040 744 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 IL1RAPQ9NPH3 570 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 EQTNQ9NQ60 294 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms