RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 NTN4Q9HB63 628 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 HEBP1Q9NRV9 189 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 C19orf12Q9NSK7 152 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 ADAMTS4O75173 837 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 MT-ND4P03905 459 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 GAAP10253 952 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 OSMP13725 252 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 TAS2R20P59543 309 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 PRPS1P60891 318 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 GK2Q14410 553 aaPredicted RBP11.87□□□□□ -0.51
SDC3-201ENST00000336798 EMC10Q5UCC4 262 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 TLDC1Q6P9B6 456 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 FAM198BQ6UWH4 519 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 FAM57BQ71RH2 274 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 TPRA1Q86W33 373 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 TBC1D20Q96BZ9 403 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 LRRTM2O43300 516 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 CLLU1OSQ5K130 101 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 PRAMEF20Q5VT98 475 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 VRK2Q86Y07 508 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 DCP2Q8IU60 420 aaKnown RBP11.86□□□□□ -0.51
SDC3-201ENST00000336798 LURAP1Q96LR2 239 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 OLAHQ9NV23 265 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 H0Y8G0 127 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 GPR39O43194 453 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 SLC16A7O60669 478 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 JRKO75564 520 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 NKAIN2Q5VXU1 208 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 TIGD3Q6B0B8 471 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 TAS1R1Q7RTX1 841 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 TMEM239Q8WW34 195 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 RNF32Q9H0A6 362 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 KLHL42Q9P2K6 505 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 LRIT1Q9P2V4 623 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 MROH1Q8NDA8 1641 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 NCR1O76036 304 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 SIRPAP78324 504 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 AARDQ4LEZ3 155 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 STEAP4Q687X5 459 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 FAM83HQ6ZRV2 1179 aaPredicted RBP11.86□□□□□ -0.51
SDC3-201ENST00000336798 PAQR8Q8TEZ7 354 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 ST8SIA2Q92186 375 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 ARRDC3Q96B67 414 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 TINAGL1Q9GZM7 467 aaPredicted RBP11.86□□□□□ -0.51
SDC3-201ENST00000336798 KIF1AQ12756 1690 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 CICQ96RK0 1608 aaPredicted RBP11.86□□□□□ -0.51
SDC3-201ENST00000336798 FAM183AA6NL82 134 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 ARPC1BO15143 372 aaKnown RBP11.86□□□□□ -0.51
SDC3-201ENST00000336798 SC5DO75845 299 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 TUSC2O75896 110 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 VEGFBP49765 207 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 EIF4HQ15056 248 aaKnown RBP11.86□□□□□ -0.51
SDC3-201ENST00000336798 KCNJ8Q15842 424 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 STEAP3Q658P3 488 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 ZNF767PQ75MW2 155 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 LRRTM3Q86VH5 581 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 BSCL2Q96G97 398 aaPredicted RBP11.86□□□□□ -0.51
SDC3-201ENST00000336798 SMIM14Q96QK8 99 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 IGSF5Q9NSI5 407 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 PLCXD1Q9NUJ7 323 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 PRAMEF26H0Y7S4 382 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 HMGCLP35914 325 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 RPP30P78346 268 aaKnown RBP11.86□□□□□ -0.51
SDC3-201ENST00000336798 FGFBP1Q14512 234 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 CNIH2Q6PI25 160 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 ZNF420Q8TAQ5 688 aaPredicted RBP11.86□□□□□ -0.51
SDC3-201ENST00000336798 C4orf36Q96KX1 117 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 SLC2A11Q9BYW1 496 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 PELI2Q9HAT8 420 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 DMRT3Q9NQL9 472 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 THSD1Q9NS62 852 aa11.86□□□□□ -0.51
SDC3-201ENST00000336798 A8MXE2 369 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 SLC34A2O95436 690 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 NAT2P11245 290 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 SSX9Q7RTT3 188 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 GTF2H4Q92759 462 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 TPPP3Q9BW30 176 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 DDX31Q9H8H2 851 aaKnown RBP11.85□□□□□ -0.51
SDC3-201ENST00000336798 CUTCQ9NTM9 273 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 PCDHA9Q9Y5H5 950 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 NSG1A0A0A6YYJ2 146 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 BET1O15155 118 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 FAM189A1O60320 539 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 TIMP1P01033 207 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 F13BP05160 661 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 HOXB5P09067 269 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 C9orf152Q5JTZ5 239 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 CST9LP1Q5W188 147 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 COX15Q7KZN9 410 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 DMBX1Q8NFW5 382 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 SLC45A3Q96JT2 553 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 MICU1Q9BPX6 476 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 SLC6A16Q9GZN6 736 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 MAGIXQ9H6Y5 334 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 ZNF736B4DX44 427 aaPredicted RBP11.85□□□□□ -0.51
SDC3-201ENST00000336798 PRKYO43930 277 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 DEFB103AP81534 67 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 GLO1Q04760 184 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 SERTAD2Q14140 314 aa11.85□□□□□ -0.51
SDC3-201ENST00000336798 KHDC1LQ5JSQ8 128 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms