RNA–Protein interactions for RNA: ENST00000299847.6

CHRFAM7A-201, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRFAM7A, Length 6,220 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-201ENST00000299847 RETREG1Q9H6L5 497 aa12.75□□□□□ -0.37
CHRFAM7A-201ENST00000299847 SOCS6O14544 535 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 CD79BP40259 229 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 DAP3P51398 398 aaKnown RBP12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 TUBB3Q13509 450 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 ZNF529Q6P280 563 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 KDELC1Q6UW63 502 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 TMEM181Q9P2C4 612 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 ANTXRLA6NF34 631 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 SLC16A7O60669 478 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 ZNF217O75362 1048 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 EMP2P54851 167 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 ACTBP60709 375 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 ERVK-16P61578 105 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 ACTG1P63261 375 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 SYPL1Q16563 259 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 RANBP10Q6VN20 620 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 ZNF845Q96IR2 970 aaPredicted RBP12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 GPN2Q9H9Y4 310 aaPredicted RBP12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 GPATCH2Q9NW75 528 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 H3BNC9 293 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 RNASET2O00584 256 aaKnown RBP12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 UPK1BO75841 260 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 CYBAP13498 195 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 RGRP47804 291 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 VEGFBP49765 207 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 FAM57BQ71RH2 274 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 MCATQ8IVS2 390 aaKnown RBP12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 TM9SF4Q92544 642 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 EGLN2Q96KS0 407 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 COQ10AQ96MF6 247 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 FOLH1BQ9HBA9 442 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 HEBP1Q9NRV9 189 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 FAM86C1Q9NVL1 165 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 ZNF223Q9UK11 482 aaPredicted RBP12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 ANKRD30BLA7E2S9 258 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 BCAS1O75363 584 aaPredicted RBP12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 ZNF33BQ06732 778 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 TMEM201Q5SNT2 666 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 OR52W1Q6IF63 320 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 BPHLQ86WA6 291 aaPredicted RBP12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 ARFGAP1Q8N6T3 406 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 BPIFA2Q96DR5 249 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 BMFQ96LC9 184 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 HOXD1Q9GZZ0 328 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 PPP1R14DQ9NXH3 145 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 FAM155AB1AL88 458 aaPredicted RBP12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 BCL2A1Q16548 175 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 TLDC1Q6P9B6 456 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 SGPP2Q8IWX5 399 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 HORMAD2Q8N7B1 307 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 BTNL2Q9UIR0 455 aa12.74□□□□□ -0.37
CHRFAM7A-201ENST00000299847 A0A1B0GVG6 124 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 ZNF705FA8MVS1 300 aaPredicted RBP12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 POLR1CO15160 346 aaPredicted RBP12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 ZNF705DP0CH99 300 aaPredicted RBP12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 ZNF705BP0CI00 300 aaPredicted RBP12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 MS4A15Q8N5U1 240 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 ZNF610Q8N9Z0 462 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 SYT3Q9BQG1 590 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 APMAPQ9HDC9 416 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 M0QZQ0 153 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 CBX7O95931 251 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 OR1Q1Q15612 314 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 COX15Q7KZN9 410 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 CCDC71LQ8N9Z2 235 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 TMEM185AQ8NFB2 350 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 INTS14Q96SY0 518 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 GMPR2Q9P2T1 348 aaKnown RBP12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 COL2A1P02458 1487 aaPredicted RBP12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 ZNF736B4DX44 427 aaPredicted RBP12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 RAB27BO00194 218 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 ZNF623O75123 536 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 IL32P24001 234 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 CSNK1A1P48729 337 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 ACY1Q03154 408 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 LSAMPQ13449 338 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 EIF4HQ15056 248 aaKnown RBP12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 SMN1Q16637 294 aaKnown RBP12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 LCTLQ6UWM7 567 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 NT5C3BQ969T7 300 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 MALSU1Q96EH3 234 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 TRMT2BQ96GJ1 504 aaKnown RBP12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 KLF16Q9BXK1 252 aaPredicted RBP12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 DPY19L2P1Q6NXN4 242 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 CDRT4Q8N9R6 151 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 ZNF300Q96RE9 604 aaPredicted RBP12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 SLC6A17Q9H1V8 727 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 OBP2BQ9NPH6 170 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 RASD1Q9Y272 281 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 HOXB5P09067 269 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 NUDT7P0C024 238 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 BMP2P12643 396 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 GIFP27352 417 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 CRABP1P29762 137 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 RFLNAQ6ZTI6 216 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 ADAMTS19Q8TE59 1207 aa12.73□□□□□ -0.37
CHRFAM7A-201ENST00000299847 PCNPQ8WW12 178 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms