RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 EIPR1Q53HC9 387 aa17.57■□□□□ 0.4
UPF1-209ENST00000600310 WIPI1Q5MNZ9 446 aaPredicted RBP17.57■□□□□ 0.4
UPF1-209ENST00000600310 CBLN3Q6UW01 205 aa17.57■□□□□ 0.4
UPF1-209ENST00000600310 FGD2Q7Z6J4 655 aa17.57■□□□□ 0.4
UPF1-209ENST00000600310 YRDCQ86U90 279 aaKnown RBP17.57■□□□□ 0.4
UPF1-209ENST00000600310 SLC30A8Q8IWU4 369 aa17.57■□□□□ 0.4
UPF1-209ENST00000600310 FAM71CQ8NEG0 241 aa17.57■□□□□ 0.4
UPF1-209ENST00000600310 NEIL3Q8TAT5 605 aa17.57■□□□□ 0.4
UPF1-209ENST00000600310 WDR60Q8WVS4 1066 aa17.57■□□□□ 0.4
UPF1-209ENST00000600310 REXO5Q96IC2 774 aaKnown RBP17.57■□□□□ 0.4
UPF1-209ENST00000600310 NSL1Q96IY1 281 aa17.57■□□□□ 0.4
UPF1-209ENST00000600310 ZNF583Q96ND8 569 aa17.57■□□□□ 0.4
UPF1-209ENST00000600310 LAT2Q9GZY6 243 aa17.57■□□□□ 0.4
UPF1-209ENST00000600310 TAS2R10Q9NYW0 307 aa17.57■□□□□ 0.4
UPF1-209ENST00000600310 DKKL1Q9UK85 242 aa17.57■□□□□ 0.4
UPF1-209ENST00000600310 ICAM5Q9UMF0 924 aa17.57■□□□□ 0.4
UPF1-209ENST00000600310 ANGPT4Q9Y264 503 aa17.57■□□□□ 0.4
UPF1-209ENST00000600310 IFT52Q9Y366 437 aa17.57■□□□□ 0.4
UPF1-209ENST00000600310 TENM4Q6N022 2769 aa17.57■□□□□ 0.4
UPF1-209ENST00000600310 CLDN24A6NM45 220 aa17.56■□□□□ 0.4
UPF1-209ENST00000600310 AQP7O14520 342 aa17.56■□□□□ 0.4
UPF1-209ENST00000600310 GMFGO60234 142 aa17.56■□□□□ 0.4
UPF1-209ENST00000600310 ESRRAP11474 423 aaPredicted RBP17.56■□□□□ 0.4
UPF1-209ENST00000600310 MNAT1P51948 309 aa17.56■□□□□ 0.4
UPF1-209ENST00000600310 SLC7A2P52569 658 aa17.56■□□□□ 0.4
UPF1-209ENST00000600310 PCBP3P57721 371 aaKnown RBP17.56■□□□□ 0.4
UPF1-209ENST00000600310 PSME3P61289 254 aa17.56■□□□□ 0.4
UPF1-209ENST00000600310 RBPJQ06330 500 aa17.56■□□□□ 0.4
UPF1-209ENST00000600310 ELOAQ14241 798 aaKnown RBP17.56■□□□□ 0.4
UPF1-209ENST00000600310 VMACQ2NL98 169 aa17.56■□□□□ 0.4
UPF1-209ENST00000600310 LIN52Q52LA3 116 aa17.56■□□□□ 0.4
UPF1-209ENST00000600310 ERICH5Q6P6B1 374 aa17.56■□□□□ 0.4
UPF1-209ENST00000600310 TRPM8Q7Z2W7 1104 aa17.56■□□□□ 0.4
UPF1-209ENST00000600310 VRK2Q86Y07 508 aa17.56■□□□□ 0.4
UPF1-209ENST00000600310 KRT73Q86Y46 540 aa17.56■□□□□ 0.4
UPF1-209ENST00000600310 SPPL2CQ8IUH8 684 aa17.56■□□□□ 0.4
UPF1-209ENST00000600310 TOR1AIP2Q8NFQ8 470 aa17.56■□□□□ 0.4
UPF1-209ENST00000600310 OR14L1PQ8NHC6 308 aa17.56■□□□□ 0.4
UPF1-209ENST00000600310 ARSGQ96EG1 525 aa17.56■□□□□ 0.4
UPF1-209ENST00000600310 PIF1Q9H611 641 aa17.56■□□□□ 0.4
UPF1-209ENST00000600310 EXO5Q9H790 373 aa17.56■□□□□ 0.4
UPF1-209ENST00000600310 CACYBPQ9HB71 228 aaKnown RBP17.56■□□□□ 0.4
UPF1-209ENST00000600310 ZNF232Q9UNY5 417 aa17.56■□□□□ 0.4
UPF1-209ENST00000600310 GPC6Q9Y625 555 aaPredicted RBP17.56■□□□□ 0.4
UPF1-209ENST00000600310 A0A087WZY1 265 aa17.55■□□□□ 0.4
UPF1-209ENST00000600310 OR14I1A6ND48 311 aa17.55■□□□□ 0.4
UPF1-209ENST00000600310 CCT8L1PA6NM43 557 aa17.55■□□□□ 0.4
UPF1-209ENST00000600310 FAM220BPB1ANY3 271 aa17.55■□□□□ 0.4
UPF1-209ENST00000600310 DNAJA2O60884 412 aa17.55■□□□□ 0.4
UPF1-209ENST00000600310 BCAS1O75363 584 aaPredicted RBP17.55■□□□□ 0.4
UPF1-209ENST00000600310 UBTFL6P0CB48 400 aaPredicted RBP17.55■□□□□ 0.4
UPF1-209ENST00000600310 HK1P19367 917 aa17.55■□□□□ 0.4
UPF1-209ENST00000600310 GNLYP22749 145 aa17.55■□□□□ 0.4
UPF1-209ENST00000600310 PTGS2P35354 604 aa17.55■□□□□ 0.4
UPF1-209ENST00000600310 PLAURQ03405 335 aa17.55■□□□□ 0.4
UPF1-209ENST00000600310 SKP2Q13309 424 aa17.55■□□□□ 0.4
UPF1-209ENST00000600310 LARS2Q15031 903 aaKnown RBP17.55■□□□□ 0.4
UPF1-209ENST00000600310 ZSWIM7Q19AV6 140 aa17.55■□□□□ 0.4
UPF1-209ENST00000600310 GLYR1Q49A26 553 aaPredicted RBP17.55■□□□□ 0.4
UPF1-209ENST00000600310 MRPL2Q5T653 305 aaKnown RBP17.55■□□□□ 0.4
UPF1-209ENST00000600310 ARSKQ6UWY0 536 aa17.55■□□□□ 0.4
UPF1-209ENST00000600310 OR5W2Q8NH69 310 aa17.55■□□□□ 0.4
UPF1-209ENST00000600310 KLHDC3Q9BQ90 382 aa17.55■□□□□ 0.4
UPF1-209ENST00000600310 EXOSC3Q9NQT5 275 aaKnown RBP17.55■□□□□ 0.4
UPF1-209ENST00000600310 SPRR3Q9UBC9 169 aa17.55■□□□□ 0.4
UPF1-209ENST00000600310 ABCD2Q9UBJ2 740 aa17.55■□□□□ 0.4
UPF1-209ENST00000600310 ZNF443Q9Y2A4 671 aaPredicted RBP17.55■□□□□ 0.4
UPF1-209ENST00000600310 ZNF835Q9Y2P0 537 aa17.55■□□□□ 0.4
UPF1-209ENST00000600310 NME4O00746 187 aa17.54■□□□□ 0.4
UPF1-209ENST00000600310 CYP7B1O75881 506 aa17.54■□□□□ 0.4
UPF1-209ENST00000600310 PABPC4LP0CB38 370 aaKnown RBP17.54■□□□□ 0.4
UPF1-209ENST00000600310 CALB2P22676 271 aa17.54■□□□□ 0.4
UPF1-209ENST00000600310 AQP1P29972 269 aa17.54■□□□□ 0.4
UPF1-209ENST00000600310 EEF1A1P68104 462 aaKnown RBP17.54■□□□□ 0.4
UPF1-209ENST00000600310 LIPEQ05469 1076 aa17.54■□□□□ 0.4
UPF1-209ENST00000600310 VEZF1Q14119 521 aa17.54■□□□□ 0.4
UPF1-209ENST00000600310 TMEM44Q2T9K0 475 aa17.54■□□□□ 0.4
UPF1-209ENST00000600310 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.54■□□□□ 0.4
UPF1-209ENST00000600310 NHSL2Q5HYW2 709 aa17.54■□□□□ 0.4
UPF1-209ENST00000600310 ZNF311Q5JNZ3 666 aa17.54■□□□□ 0.4
UPF1-209ENST00000600310 INTS11Q5TA45 600 aaKnown RBP17.54■□□□□ 0.4
UPF1-209ENST00000600310 RNF220Q5VTB9 566 aa17.54■□□□□ 0.4
UPF1-209ENST00000600310 ZNF836Q6ZNA1 936 aa17.54■□□□□ 0.4
UPF1-209ENST00000600310 Q6ZPB1 254 aaPredicted RBP17.54■□□□□ 0.4
UPF1-209ENST00000600310 PGAM4Q8N0Y7 254 aa17.54■□□□□ 0.4
UPF1-209ENST00000600310 OR2T12Q8NG77 320 aa17.54■□□□□ 0.4
UPF1-209ENST00000600310 FBXO27Q8NI29 283 aa17.54■□□□□ 0.4
UPF1-209ENST00000600310 CNOT9Q92600 299 aaKnown RBP17.54■□□□□ 0.4
UPF1-209ENST00000600310 ZNF607Q96SK3 696 aa17.54■□□□□ 0.4
UPF1-209ENST00000600310 SPATA5L1Q9BVQ7 753 aa17.54■□□□□ 0.4
UPF1-209ENST00000600310 MED17Q9NVC6 651 aa17.54■□□□□ 0.4
UPF1-209ENST00000600310 RPH3AQ9Y2J0 694 aaPredicted RBP17.54■□□□□ 0.4
UPF1-209ENST00000600310 SLC6A5Q9Y345 797 aa17.54■□□□□ 0.4
UPF1-209ENST00000600310 CHST2Q9Y4C5 530 aa17.54■□□□□ 0.4
UPF1-209ENST00000600310 CDHR4A6H8M9 788 aa17.53■□□□□ 0.4
UPF1-209ENST00000600310 FAM47E-STBD1D6RA91 191 aa17.53■□□□□ 0.4
UPF1-209ENST00000600310 ZNHIT1O43257 154 aa17.53■□□□□ 0.4
UPF1-209ENST00000600310 SLC19A2O60779 497 aa17.53■□□□□ 0.4
UPF1-209ENST00000600310 GCM2O75603 506 aaPredicted RBP17.53■□□□□ 0.4
UPF1-209ENST00000600310 SERPINB7O75635 380 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms