RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 PDE7BQ9NP56 450 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 CHCHD3Q9NX63 227 aaKnown RBP18.21■□□□□ 0.51
CLIP3-206ENST00000593074 TMEM5Q9Y2B1 443 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 PEX16Q9Y5Y5 336 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 IGHV5-51A0A0C4DH38 117 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 ZNF670-ZNF695F2Z2N8 137 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 HRKO00198 91 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 CLDN4O14493 209 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 ZNF749O43361 778 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 LIMS3P0CW19 117 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 LIMS4P0CW20 117 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 TBXA2RP21731 343 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 GPR3P46089 330 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 FNTBP49356 437 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 EPHA4P54764 986 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 ZC3H14Q6PJT7 736 aaKnown RBP18.21■□□□□ 0.51
CLIP3-206ENST00000593074 HSDL2Q6YN16 418 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 TMPRSS11FQ6ZWK6 438 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 GUCD1Q96NT3 240 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 ASPNQ9BXN1 380 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 RAB33BQ9H082 229 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 DUSP15Q9H1R2 295 aaPredicted RBP18.21■□□□□ 0.51
CLIP3-206ENST00000593074 CAPN10Q9HC96 672 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 EXOSC4Q9NPD3 245 aaKnown RBP18.21■□□□□ 0.51
CLIP3-206ENST00000593074 LRIT1Q9P2V4 623 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 EPHA6Q9UF33 1036 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 IL20RAQ9UHF4 553 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 DTX4Q9Y2E6 619 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 A0A0B4J2E0 115 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 A0A1B0GX12 115 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 WWP2O00308 870 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 PRAMEF2O60811 474 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 IFI30P13284 250 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 HTR1FP30939 366 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 BTG2P78543 158 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 ZNF45Q02386 682 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 AMZ1Q400G9 498 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 TCTE1Q5JU00 501 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 OR2G6Q5TZ20 316 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 NKAIN2Q5VXU1 208 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 UBALD2Q8IYN6 164 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 ZNF485Q8NCK3 441 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 OR4N2Q8NGD1 307 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 HS6ST2Q96MM7 605 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 ZNF578Q96N58 590 aaPredicted RBP18.2■□□□□ 0.5
CLIP3-206ENST00000593074 DGAT2Q96PD7 388 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 CD180Q99467 661 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 CNPPD1Q9BV87 410 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 DNAJB12Q9NXW2 375 aaKnown RBP18.2■□□□□ 0.5
CLIP3-206ENST00000593074 CBLCQ9ULV8 474 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 EXOGQ9Y2C4 368 aaKnown RBP18.2■□□□□ 0.5
CLIP3-206ENST00000593074 RNF215Q9Y6U7 377 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 THADAQ6YHU6 1953 aa18.2■□□□□ 0.5
CLIP3-206ENST00000593074 FITM1A5D6W6 292 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 SAGE2PA6NJ88 616 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 BHLHE40O14503 412 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 CHP2O43745 196 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 SLC2A10O95528 541 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 ETV6P41212 452 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 RFX3P48380 749 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 CTBP2P56545 445 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 RPL13AP3Q6NVV1 102 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 NPSR1Q6W5P4 371 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 ZNF554Q86TJ5 538 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 ABCA7Q8IZY2 2146 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 TM9SF4Q92544 642 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 SLC35B4Q969S0 331 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 AHCYL2Q96HN2 611 aaKnown RBP18.19■□□□□ 0.5
CLIP3-206ENST00000593074 TMEM27Q9HBJ8 222 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 ATP13A2Q9NQ11 1180 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 HINT3Q9NQE9 182 aaKnown RBP18.19■□□□□ 0.5
CLIP3-206ENST00000593074 FLRT3Q9NZU0 649 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 SSR3Q9UNL2 185 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 CSNK1G3Q9Y6M4 447 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 A0A075B6Q4 140 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 NPIPB9F8W1W9 429 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 UPK1BO75841 260 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 IGHA1P01876 353 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 SLC1A3P43003 542 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 HSD17B7P56937 341 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 TPBGQ13641 420 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 ERV3-1Q14264 604 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 ZNF141Q15928 474 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 SHFQ7M4L6 423 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 BBS1Q8NFJ9 593 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 OR52L1Q8NGH7 329 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 BPIFA2Q96DR5 249 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 MMABQ96EY8 250 aaPredicted RBP18.19■□□□□ 0.5
CLIP3-206ENST00000593074 ZNF426Q9BUY5 554 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 JAM3Q9BX67 310 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 KLHL3Q9UH77 587 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 MED31Q9Y3C7 131 aa18.19■□□□□ 0.5
CLIP3-206ENST00000593074 TMEM184BQ9Y519 407 aaPredicted RBP18.19■□□□□ 0.5
CLIP3-206ENST00000593074 SPIN1Q9Y657 262 aaPredicted RBP18.19■□□□□ 0.5
CLIP3-206ENST00000593074 FUOMA2VDF0 154 aa18.18■□□□□ 0.5
CLIP3-206ENST00000593074 ADAM11O75078 769 aa18.18■□□□□ 0.5
CLIP3-206ENST00000593074 FUT1P19526 365 aa18.18■□□□□ 0.5
CLIP3-206ENST00000593074 MAOAP21397 527 aa18.18■□□□□ 0.5
CLIP3-206ENST00000593074 TGM1P22735 817 aa18.18■□□□□ 0.5
CLIP3-206ENST00000593074 RPS19P39019 145 aaKnown RBP18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms