RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 MARCH3Q86UD3 253 aa12.55□□□□□ -0.4
CCDC40-209ENST00000573474 MISPQ8IVT2 679 aa12.55□□□□□ -0.4
CCDC40-209ENST00000573474 OFCC1Q8IZS5 231 aa12.55□□□□□ -0.4
CCDC40-209ENST00000573474 HS3ST5Q8IZT8 346 aa12.55□□□□□ -0.4
CCDC40-209ENST00000573474 POGLUT1Q8NBL1 392 aa12.55□□□□□ -0.4
CCDC40-209ENST00000573474 FAM71CQ8NEG0 241 aa12.55□□□□□ -0.4
CCDC40-209ENST00000573474 OR5M3Q8NGP4 307 aa12.55□□□□□ -0.4
CCDC40-209ENST00000573474 MAGEE2Q8TD90 523 aaPredicted RBP12.55□□□□□ -0.4
CCDC40-209ENST00000573474 GIPC3Q8TF64 312 aa12.55□□□□□ -0.4
CCDC40-209ENST00000573474 SPACA9Q96E40 222 aaPredicted RBP12.55□□□□□ -0.4
CCDC40-209ENST00000573474 ZNF597Q96LX8 424 aa12.55□□□□□ -0.4
CCDC40-209ENST00000573474 BARD1Q99728 777 aaKnown RBP12.55□□□□□ -0.4
CCDC40-209ENST00000573474 TRIM2Q9C040 744 aa12.55□□□□□ -0.4
CCDC40-209ENST00000573474 LAT2Q9GZY6 243 aa12.55□□□□□ -0.4
CCDC40-209ENST00000573474 ANKRD19PQ9H560 264 aa12.55□□□□□ -0.4
CCDC40-209ENST00000573474 TMEM27Q9HBJ8 222 aa12.55□□□□□ -0.4
CCDC40-209ENST00000573474 ATP13A2Q9NQ11 1180 aa12.55□□□□□ -0.4
CCDC40-209ENST00000573474 EXOSC3Q9NQT5 275 aaKnown RBP12.55□□□□□ -0.4
CCDC40-209ENST00000573474 WDR70Q9NW82 654 aa12.55□□□□□ -0.4
CCDC40-209ENST00000573474 NTNG1Q9Y2I2 539 aa12.55□□□□□ -0.4
CCDC40-209ENST00000573474 TRAPPC13A5PLN9 417 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 FAAHO00519 579 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 TP53I11O14683 189 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 ZNF264O43296 627 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 CYP7B1O75881 506 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 CCNB2O95067 398 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 ALPLP05186 524 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 THRBP10828 461 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 PRKACGP22612 351 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 HTR2AP28223 471 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 SOX3P41225 446 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 RPP38P78345 283 aaKnown RBP12.54□□□□□ -0.4
CCDC40-209ENST00000573474 PPP2R2BQ00005 443 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 EPS8Q12929 822 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 AIMP2Q13155 320 aaKnown RBP12.54□□□□□ -0.4
CCDC40-209ENST00000573474 SKP2Q13309 424 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 LAPTM4AQ15012 233 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 TRAM2Q15035 370 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 OR1Q1Q15612 314 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 ZNF791Q3KP31 576 aaPredicted RBP12.54□□□□□ -0.4
CCDC40-209ENST00000573474 FGD3Q5JSP0 725 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 DCAF10Q5QP82 559 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 DCST1Q5T197 706 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 FCRLBQ6BAA4 426 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 ZNF613Q6PF04 617 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 VASH2Q86V25 355 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 TSPYL5Q86VY4 417 aaPredicted RBP12.54□□□□□ -0.4
CCDC40-209ENST00000573474 LINC00471Q8N535 108 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 GATSQ8NAP1 163 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 TOR1AIP2Q8NFQ8 470 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 ADAMTS16Q8TE57 1224 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 GRHL3Q8TE85 626 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 RNF138Q8WVD3 245 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 ASB15Q8WXK1 588 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 SLC41A3Q96GZ6 507 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 THOC3Q96J01 351 aaKnown RBP12.54□□□□□ -0.4
CCDC40-209ENST00000573474 NODALQ96S42 347 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 FUZQ9BT04 418 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 SMURF2Q9HAU4 748 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 CTPS2Q9NRF8 586 aa12.54□□□□□ -0.4
CCDC40-209ENST00000573474 TRBV4-1A0A0J9YWV2 114 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 C7orf72A4D263 438 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 ARRDC5A6NEK1 342 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 MAN1A2O60476 641 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 OR6B1O95007 311 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 ANGPTL1O95841 491 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 ANXA8P13928 327 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 FUT4P22083 530 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 ELAVL4P26378 380 aaKnown RBP12.53□□□□□ -0.4
CCDC40-209ENST00000573474 SLC6A8P48029 635 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 FOXD4Q12950 439 aaPredicted RBP12.53□□□□□ -0.4
CCDC40-209ENST00000573474 CLN3Q13286 438 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 MEP1AQ16819 746 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 NDUFAF6Q330K2 333 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 FAHD1Q6P587 224 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 GDF7Q7Z4P5 450 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 TMEM156Q8N614 296 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 LSMEM1Q8N8F7 131 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 ATG16L2Q8NAA4 619 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 OR10G2Q8NGC3 310 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 BRIX1Q8TDN6 353 aaKnown RBP12.53□□□□□ -0.4
CCDC40-209ENST00000573474 THAP4Q8WY91 577 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 SLC38A4Q969I6 547 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 SECISBP2Q96T21 854 aaKnown RBP12.53□□□□□ -0.4
CCDC40-209ENST00000573474 PSD2Q9BQI7 771 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 HHATLQ9HCP6 504 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 MAN2C1Q9NTJ4 1040 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 CARD8Q9Y2G2 431 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 C15orf41Q9Y2V0 281 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 ORC6Q9Y5N6 252 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 WDFY3Q8IZQ1 3526 aa12.53□□□□□ -0.4
CCDC40-209ENST00000573474 SH3PXD2BA1X283 911 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 OIP5O43482 229 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 HCRTR2O43614 444 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 SCO2O43819 266 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 ADAM11O75078 769 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 LINGO3P0C6S8 592 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 UQCRBP14927 111 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 RYKP34925 604 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 DAPP51397 102 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms