RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ARID1BQ8NFD5 2236 aaPredicted RBP24.31■■□□□ 1.48
CCDC88C-205ENST00000553403 TLX2O43763 284 aaPredicted RBP24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 CNOT3O75175 753 aaKnown RBP24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 CFIP05156 583 aa24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 RORAP35398 523 aa24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 ACAA2P42765 397 aaKnown RBP24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 RNF144AP50876 292 aaPredicted RBP24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 PRKCDQ05655 676 aa24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 ZNF620Q6ZNG0 422 aa24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 WDR36Q8NI36 951 aaKnown RBP24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 CEP76Q8TAP6 659 aa24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 TEX12Q9BXU0 123 aa24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 TMEM5Q9Y2B1 443 aa24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 CLCA3PQ9Y6N3 262 aa24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 CDH10Q9Y6N8 788 aa24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 POLR1CO15160 346 aaPredicted RBP24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 IGKV3-11P04433 115 aa24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 ADORA3P0DMS8 318 aa24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 HOXD11P31277 338 aaPredicted RBP24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 WDR88Q6ZMY6 472 aa24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 ZNF367Q7RTV3 350 aa24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 TMEM163Q8TC26 289 aa24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 ART5Q96L15 291 aa24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 TSSK6Q9BXA6 273 aa24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 HOXD1Q9GZZ0 328 aa24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 LRRN3Q9H3W5 708 aa24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 TBC1D23Q9NUY8 699 aa24.3■■□□□ 1.48
CCDC88C-205ENST00000553403 A0A0B4J2E0 115 aa24.29■■□□□ 1.48
CCDC88C-205ENST00000553403 A0A1B0GX12 115 aa24.29■■□□□ 1.48
CCDC88C-205ENST00000553403 A0A1W2PQM1 296 aa24.29■■□□□ 1.48
CCDC88C-205ENST00000553403 CHP2O43745 196 aa24.29■■□□□ 1.48
CCDC88C-205ENST00000553403 DDAH2O95865 285 aa24.29■■□□□ 1.48
CCDC88C-205ENST00000553403 BCL10O95999 233 aa24.29■■□□□ 1.48
CCDC88C-205ENST00000553403 RPLP0P05388 317 aaKnown RBP24.29■■□□□ 1.48
CCDC88C-205ENST00000553403 ZNF91Q05481 1191 aa24.29■■□□□ 1.48
CCDC88C-205ENST00000553403 TIGD6Q17RP2 521 aa24.29■■□□□ 1.48
CCDC88C-205ENST00000553403 SYT14P1Q58G82 188 aa24.29■■□□□ 1.48
CCDC88C-205ENST00000553403 C1orf189Q5VU69 101 aa24.29■■□□□ 1.48
CCDC88C-205ENST00000553403 RHBDD2Q6NTF9 364 aa24.29■■□□□ 1.48
CCDC88C-205ENST00000553403 LSMEM1Q8N8F7 131 aa24.29■■□□□ 1.48
CCDC88C-205ENST00000553403 SLC2A12Q8TD20 617 aa24.29■■□□□ 1.48
CCDC88C-205ENST00000553403 ZNF721Q8TF20 911 aa24.29■■□□□ 1.48
CCDC88C-205ENST00000553403 SERINC4A6NH21 518 aa24.28■■□□□ 1.48
CCDC88C-205ENST00000553403 UNC119BA6NIH7 251 aa24.28■■□□□ 1.48
CCDC88C-205ENST00000553403 A8MUA0 341 aa24.28■■□□□ 1.48
CCDC88C-205ENST00000553403 TMX2-CTNND1H3BSU7 103 aa24.28■■□□□ 1.48
CCDC88C-205ENST00000553403 M0R082 166 aa24.28■■□□□ 1.48
CCDC88C-205ENST00000553403 SLC22A1O15245 554 aa24.28■■□□□ 1.48
CCDC88C-205ENST00000553403 ATXN8OSP0DMR3 200 aa24.28■■□□□ 1.48
CCDC88C-205ENST00000553403 DBTP11182 482 aaKnown RBP24.28■■□□□ 1.48
CCDC88C-205ENST00000553403 TGFBR2P37173 567 aa24.28■■□□□ 1.48
CCDC88C-205ENST00000553403 AQP6Q13520 282 aa24.28■■□□□ 1.48
CCDC88C-205ENST00000553403 NNATQ16517 81 aa24.28■■□□□ 1.48
CCDC88C-205ENST00000553403 VWA2Q5GFL6 755 aa24.28■■□□□ 1.48
CCDC88C-205ENST00000553403 RNLSQ5VYX0 342 aa24.28■■□□□ 1.48
CCDC88C-205ENST00000553403 CYP4Z2PQ8N1L4 340 aa24.28■■□□□ 1.48
CCDC88C-205ENST00000553403 PLPP5Q8NEB5 264 aa24.28■■□□□ 1.48
CCDC88C-205ENST00000553403 OR14A16Q8NHC5 309 aa24.28■■□□□ 1.48
CCDC88C-205ENST00000553403 TMEM80Q96HE8 168 aa24.28■■□□□ 1.48
CCDC88C-205ENST00000553403 ZNF582Q96NG8 517 aaPredicted RBP24.28■■□□□ 1.48
CCDC88C-205ENST00000553403 FAM86C1Q9NVL1 165 aa24.28■■□□□ 1.48
CCDC88C-205ENST00000553403 FLRT3Q9NZU0 649 aa24.28■■□□□ 1.48
CCDC88C-205ENST00000553403 A0A1B0GWA3 101 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 FRG2CA6NGY1 282 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 EFCAB7A8K855 629 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 IL33O95760 270 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 CD36P16671 472 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 RBM34P42696 430 aaKnown RBP24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 DCAF7P61962 342 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 TMPRSS11FQ6ZWK6 438 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 SLITRK4Q8IW52 837 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 ZNF440Q8IYI8 595 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 CDK20Q8IZL9 346 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 EID2Q8N6I1 236 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 ZNF321PQ8N8H1 164 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 DTWD2Q8NBA8 298 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 BRIX1Q8TDN6 353 aaKnown RBP24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 DAZLQ92904 295 aaKnown RBP24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 LRR1Q96L50 414 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 OR8D2Q9GZM6 311 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 TGIF2Q9GZN2 237 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 MED17Q9NVC6 651 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 FBXO4Q9UKT5 387 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 SLC35A3Q9Y2D2 325 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 MED31Q9Y3C7 131 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 UNC13CQ8NB66 2214 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 SNTNA6NMZ2 147 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 PTHP01270 115 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 ZNF182P17025 639 aaPredicted RBP24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 CTBP2P56545 445 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 SPCS2Q15005 226 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 PGGHGQ32M88 737 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 KLHL26Q53HC5 615 aa24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 MRTO4Q9UKD2 239 aaKnown RBP24.27■■□□□ 1.48
CCDC88C-205ENST00000553403 IGHV5-10-1A0A0J9YXX1 117 aa24.26■■□□□ 1.47
CCDC88C-205ENST00000553403 CDC42EP2O14613 210 aa24.26■■□□□ 1.47
CCDC88C-205ENST00000553403 HMGN1P05114 100 aa24.26■■□□□ 1.47
CCDC88C-205ENST00000553403 IFI30P13284 250 aa24.26■■□□□ 1.47
CCDC88C-205ENST00000553403 CSTF2P33240 577 aaKnown RBP eCLIP24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms