RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 MTSS1LQ765P7 747 aa13.67□□□□□ -0.22
HOXC11-202ENST00000546378 ZNF547Q8IVP9 402 aa13.67□□□□□ -0.22
HOXC11-202ENST00000546378 NUP43Q8NFH3 380 aa13.67□□□□□ -0.22
HOXC11-202ENST00000546378 NKD1Q969G9 470 aa13.67□□□□□ -0.22
HOXC11-202ENST00000546378 OR14A2Q96R54 314 aa13.67□□□□□ -0.22
HOXC11-202ENST00000546378 GON7Q9BXV9 100 aa13.67□□□□□ -0.22
HOXC11-202ENST00000546378 BRF2Q9HAW0 419 aa13.67□□□□□ -0.22
HOXC11-202ENST00000546378 COPS3Q9UNS2 423 aa13.67□□□□□ -0.22
HOXC11-202ENST00000546378 A3GALT2U3KPV4 340 aa13.67□□□□□ -0.22
HOXC11-202ENST00000546378 NPC1O15118 1278 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 MRPS14O60783 128 aaKnown RBP13.66□□□□□ -0.22
HOXC11-202ENST00000546378 SEC13P55735 322 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 PCBP3P57721 371 aaKnown RBP13.66□□□□□ -0.22
HOXC11-202ENST00000546378 GRM7Q14831 915 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 NHLRC1Q6VVB1 395 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 C17orf107Q6ZR85 190 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 RELL2Q8NC24 303 aaPredicted RBP13.66□□□□□ -0.22
HOXC11-202ENST00000546378 FAM174AQ8TBP5 190 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 SNX33Q8WV41 574 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 SLC6A17Q9H1V8 727 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 DPAGT1Q9H3H5 408 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 SLC35C2Q9NQQ7 365 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 MGAT4CQ9UBM8 478 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 MSRAQ9UJ68 235 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 ADAM30Q9UKF2 790 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 PEX12O00623 359 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 DNAJB6O75190 326 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 TCRBP04435 133 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 GRK1Q15835 563 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 NDUFAF6Q330K2 333 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 DMRTC1Q5HYR2 192 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 SLC6A19Q695T7 634 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 TMED4Q7Z7H5 227 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 C12orf40Q86WS4 652 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 OR52L1Q8NGH7 329 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 OR5J2Q8NH18 312 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 OR5W2Q8NH69 310 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 SP7Q8TDD2 431 aaPredicted RBP13.66□□□□□ -0.22
HOXC11-202ENST00000546378 OR5P2Q8WZ92 322 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 NXPE3Q969Y0 559 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 HYLS1Q96M11 299 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 TMEM38AQ9H6F2 299 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 KLHL21Q9UJP4 597 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 RWDD3Q9Y3V2 267 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 SLC5A10A0PJK1 596 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 EPOPA6NHQ4 379 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 ANKRD34CP0C6C1 535 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 GABRA5P31644 462 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 PITPNBP48739 271 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 SNRPNP63162 240 aaKnown RBP13.66□□□□□ -0.22
HOXC11-202ENST00000546378 EEF1A2Q05639 463 aaKnown RBP13.66□□□□□ -0.22
HOXC11-202ENST00000546378 SLC9A5Q14940 896 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 EXOSC7Q15024 291 aaKnown RBP13.66□□□□□ -0.22
HOXC11-202ENST00000546378 HENMT1Q5T8I9 393 aaKnown RBP13.66□□□□□ -0.22
HOXC11-202ENST00000546378 MEDAGQ5VYS4 303 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 ZDHHC20Q5W0Z9 365 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 ZNF793Q6ZN11 406 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 FRRS1Q6ZNA5 592 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 QSOX2Q6ZRP7 698 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 TBC1D19Q8N5T2 526 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 ACBD7Q8N6N7 88 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 OR2T4Q8NH00 348 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 GHSRQ92847 366 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 MED30Q96HR3 178 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 RSPH9Q9H1X1 276 aaPredicted RBP13.66□□□□□ -0.22
HOXC11-202ENST00000546378 MYNNQ9NPC7 610 aa13.66□□□□□ -0.22
HOXC11-202ENST00000546378 C4orf47A7E2U8 309 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 LINC01565O15544 149 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 KLHL18O94889 574 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 CPMP14384 443 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 ACSM3Q53FZ2 586 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 ZNF628Q5EBL2 1059 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 MSANTD1Q6ZTZ1 278 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 KLHDC8AQ8IYD2 350 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 METTL27Q8N6F8 245 aaPredicted RBP13.65□□□□□ -0.22
HOXC11-202ENST00000546378 TTYH1Q9H313 450 aaPredicted RBP13.65□□□□□ -0.22
HOXC11-202ENST00000546378 KCNK15Q9H427 330 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 MAN2C1Q9NTJ4 1040 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 PLXNA4Q9HCM2 1894 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 A0A1B0GTH9 108 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 GMDSO60547 372 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 WNT1P04628 370 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 CCR8P51685 355 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 SF3A2Q15428 464 aaKnown RBP13.65□□□□□ -0.22
HOXC11-202ENST00000546378 ST3GAL2Q16842 350 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 FAM74A1Q5RGS3 127 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 SFXN4Q6P4A7 337 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 C9orf62Q8N4C0 152 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 TRAM1L1Q8N609 369 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 C1orf216Q8TAB5 229 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 FANK1Q8TC84 345 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 RASSF5Q8WWW0 418 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 FGF13Q92913 245 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 RGMAQ96B86 450 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 ZNF707Q96C28 371 aaPredicted RBP13.65□□□□□ -0.22
HOXC11-202ENST00000546378 CNRIP1Q96F85 164 aaPredicted RBP13.65□□□□□ -0.22
HOXC11-202ENST00000546378 AMDHD1Q96NU7 426 aa13.65□□□□□ -0.22
HOXC11-202ENST00000546378 SIRT3Q9NTG7 399 aaPredicted RBP13.65□□□□□ -0.22
HOXC11-202ENST00000546378 ING1Q9UK53 422 aaPredicted RBP13.65□□□□□ -0.22
HOXC11-202ENST00000546378 WDR45Q9Y484 360 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms