RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	BTBD16	Q32M84	506 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	MZT2A	Q6P582	158 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	PRSS41	Q7RTY9	318 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	NR2C2AP	Q86WQ0	139 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	LIX1L	Q8IVB5	337 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	SIRT6	Q8N6T7	355 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	OR13H1	Q8NG92	308 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	OR4M2	Q8NGB6	313 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	TMEM255B	Q8WV15	326 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	SNAPC3	Q92966	411 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	ARHGDIG	Q99819	225 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	MARVELD1	Q9BSK0	173 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	STARD5	Q9NSY2	213 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	ING3	Q9NXR8	418 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	CBLC	Q9ULV8	474 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	MRPS2	Q9Y399	296 aa	Known RBP	11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	SCN2A	Q99250	2005 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	CHST10	O43529	356 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	THY1	P04216	161 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	SLC35G6	P0C7Q6	338 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	EVI2B	P34910	448 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	KIAA1024L	P59773	190 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	RRAS2	P62070	204 aa	Predicted RBP	11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	PPP1CA	P62136	330 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	RGS1	Q08116	209 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	C1orf61	Q13536	156 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	IDNK	Q5T6J7	187 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204		Q6ZS52	159 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	OR51G2	Q8NGK0	314 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	ZFPM2	Q8WW38	1151 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	OSTF1	Q92882	214 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	ELP4	Q96EB1	424 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	CITED4	Q96RK1	184 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	IL20	Q9NYY1	176 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	EXTL2	Q9UBQ6	330 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	KLF15	Q9UIH9	416 aa		11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	EXOG	Q9Y2C4	368 aa	Known RBP	11.64	□□□□□ -0.55
RNF4-222	ENST00000541204	ORC5	O43913	435 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	ZIC2	O95409	532 aa	Predicted RBP	11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	IGHA1	P01876	353 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	AGFG1	P52594	562 aa	Known RBP	11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	PRR5	P85299	388 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	TNK1	Q13470	666 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	PGGHG	Q32M88	737 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	FAM111B	Q6SJ93	734 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	ZNF322	Q6U7Q0	402 aa	Predicted RBP	11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	IL20RB	Q6UXL0	311 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	PLEKHM3	Q6ZWE6	761 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	TRIL	Q7L0X0	811 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	NRROS	Q86YC3	692 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	CPO	Q8IVL8	374 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	SRFBP1	Q8NEF9	429 aa	Known RBP	11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	OR56A1	Q8NGH5	318 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	SFXN5	Q8TD22	340 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	TBX5	Q99593	518 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	COQ7	Q99807	217 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	HDHD2	Q9H0R4	259 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	PTGFRN	Q9P2B2	879 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	TNFRSF10D	Q9UBN6	386 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	POLH	Q9Y253	713 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	CDH10	Q9Y6N8	788 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	ZC3H12D	A2A288	527 aa	Known RBP	11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	LRRC72	A6NJI9	287 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	SGK494	L7N484	410 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	SYT5	O00445	386 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	CDC42EP2	O14613	210 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	ARHGEF9	O43307	516 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	LANCL1	O43813	399 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	TRIM3	O75382	744 aa	Predicted RBP	11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	SLC43A1	O75387	559 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	FPR3	P25089	353 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	HTR1F	P30939	366 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	RGS8	P57771	180 aa	Predicted RBP	11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	RPS15A	P62244	130 aa	Known RBP	11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	RIN1	Q13671	783 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	ASB18	Q6ZVZ8	466 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	C16orf62	Q7Z3J2	963 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	PLCZ1	Q86YW0	608 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	SLC16A11	Q8NCK7	471 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	OR7G2	Q8NG99	324 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	ACOT11	Q8WXI4	607 aa	Predicted RBP	11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	NACC2	Q96BF6	587 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	NIPAL2	Q9H841	368 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	CAPN10	Q9HC96	672 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	HINT3	Q9NQE9	182 aa	Known RBP	11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	H2AFY2	Q9P0M6	372 aa	Predicted RBP	11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	CYP8B1	Q9UNU6	501 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	SIRT4	Q9Y6E7	314 aa	Predicted RBP	11.63	□□□□□ -0.55
RNF4-222	ENST00000541204	SLCO1B1	Q9Y6L6	691 aa		11.63	□□□□□ -0.55
RNF4-222	ENST00000541204		A0A1B0GVC2	190 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204		A6NIN4	97 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	C2CD4D	B7Z1M9	353 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	INMT-MINDY4	F8WBC2	141 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	LDB3	O75112	727 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	OR2B3	O76000	313 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	DRD1	P21728	446 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	PTBP1	P26599	531 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	STAT5A	P42229	794 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	PDX1	P52945	283 aa		11.62	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 176.3 ms