RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 BANPQ8N9N5 519 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 NUP43Q8NFH3 380 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 B4GALNT2Q8NHY0 566 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 FAM110BQ8TC76 370 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 ROBO4Q8WZ75 1007 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 MS4A4EQ96PG1 132 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 KCNA7Q96RP8 456 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 TRIM2Q9C040 744 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 TMEM185BQ9H7F4 350 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 MID1IP1Q9NPA3 183 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 CDC42EP3Q9UKI2 254 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 POLR3HQ9Y535 204 aaPredicted RBP13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 ANK3Q12955 4377 aaKnown RBP13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 CUBNO60494 3623 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 KIF2AO00139 706 aaPredicted RBP13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 CRCPO75575 148 aa13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 KCNK2O95069 426 aa13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 FAM157CP0CG43 387 aa13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 DDX5P17844 614 aaKnown RBP13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 SFTPDP35247 375 aa13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 DSCR9P59020 149 aa13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 FAPQ12884 760 aa13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 PGGHGQ32M88 737 aa13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 Q6ZT83 130 aa13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 FCRLAQ7L513 359 aa13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 ZNF551Q7Z340 670 aaPredicted RBP13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 TUSC5Q8IXB3 177 aa13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 CEP112Q8N8E3 955 aa13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 GATSQ8NAP1 163 aa13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 ZNF527Q8NB42 609 aa13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 ACMSDQ8TDX5 336 aa13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 ABHD3Q8WU67 409 aa13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 MUCL1Q96DR8 90 aa13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 SH3YL1Q96HL8 342 aaPredicted RBP13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 TRAF4Q9BUZ4 470 aaPredicted RBP13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 GSTO2Q9H4Y5 243 aa13.13□□□□□ -0.31
CCDC88B-201ENST00000301897 H3BNH8 94 aa13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 TBX19O60806 448 aa13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 ADAM11O75078 769 aa13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 F12P00748 615 aaPredicted RBP13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 ADAP00813 363 aa13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 ALOX5P09917 674 aa13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 LINGO3P0C6S8 592 aa13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 PRKAG1P54619 331 aa13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 SUMO3P55854 103 aaPredicted RBP13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 AGAP6Q5VW22 663 aa13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 BHLHA15Q7RTS1 189 aaPredicted RBP13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 NUFIP2Q7Z417 695 aaKnown RBP13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 SZRD1Q7Z422 152 aa13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 P2RY8Q86VZ1 359 aa13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 ZNF619Q8N2I2 560 aa13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 CCNYL1Q8N7R7 359 aa13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 COX18Q8N8Q8 333 aa13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 POC1BQ8TC44 478 aa13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 ARL8AQ96BM9 186 aa13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 RADILQ96JH8 1075 aa13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 ADAD1Q96M93 576 aaKnown RBP13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 NPAS1Q99742 590 aa13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 ACSS1Q9NUB1 689 aaPredicted RBP13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 CISD1Q9NZ45 108 aaKnown RBP13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 KLHL9Q9P2J3 617 aa13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 ACTL7BQ9Y614 415 aa13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 GPC6Q9Y625 555 aaPredicted RBP13.12□□□□□ -0.31
CCDC88B-201ENST00000301897 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 ZNF195O14628 629 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 SEC22BO75396 215 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 ABHD2P08910 425 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 ACP2P11117 423 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 PRPH2P23942 346 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 PRIM2P49643 509 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 CDH11P55287 796 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 PPA1Q15181 289 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 TSC22D1Q15714 1073 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 CLEC2AQ6UVW9 174 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 HOMEZQ8IX15 550 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 C17orf53Q8N3J3 647 aaPredicted RBP13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 SLC16A11Q8NCK7 471 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 KBTBD8Q8NFY9 601 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 IFT81Q8WYA0 676 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 NEUROG1Q92886 237 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 PPCDCQ96CD2 204 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 GIMAP5Q96F15 307 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 CCT7Q99832 543 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 BTBD2Q9BX70 525 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 HOXD1Q9GZZ0 328 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 BCO1Q9HAY6 547 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 DUSP22Q9NRW4 184 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 TMEM160Q9NX00 188 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 GIN1Q9NXP7 522 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 LPAR3Q9UBY5 353 aa13.11□□□□□ -0.31
CCDC88B-201ENST00000301897 DPRXA6NFQ7 191 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 NPIPB8E9PQR5 432 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 UBFD1O14562 309 aaKnown RBP13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 RGS14O43566 566 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 NUDT14O95848 222 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 CD8AP01732 235 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 UROSP10746 265 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 MYL2P10916 166 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 ATP6V1C1P21283 382 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 GCAP28676 217 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms