RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 A8MUA0 341 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 CASC3O15234 703 aaKnown RBP15.45■□□□□ 0.06
VPS54-201ENST00000272322 SURF4O15260 269 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 DYRK3O43781 588 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 TBX19O60806 448 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 ADAM11O75078 769 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 PPP1R3DO95685 299 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 ZGLP1P0C6A0 271 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 SRP54P61011 504 aaKnown RBP15.45■□□□□ 0.06
VPS54-201ENST00000272322 FCRL6Q6DN72 434 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 LYPD4Q6UWN0 246 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 RTL10Q7L3V2 364 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 AVL9Q8NBF6 648 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 ENKURQ8TC29 256 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 PEX11GQ96HA9 241 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 HDHD2Q9H0R4 259 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 PPIL3Q9H2H8 161 aaKnown RBP15.45■□□□□ 0.06
VPS54-201ENST00000272322 MTHFD2LQ9H903 347 aaPredicted RBP15.45■□□□□ 0.06
VPS54-201ENST00000272322 ANKHQ9HCJ1 492 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 RANGRFQ9HD47 186 aaPredicted RBP15.45■□□□□ 0.06
VPS54-201ENST00000272322 ZNF346Q9UL40 294 aaKnown RBP15.45■□□□□ 0.06
VPS54-201ENST00000272322 DAPL1A0PJW8 107 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 GABRPO00591 440 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 CHRNB1P11230 501 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 SHC1P29353 583 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 MAGEB1P43366 347 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 TPMTP51580 245 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 GAS1P54826 345 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 DMPKQ09013 629 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 ILF3Q12906 894 aaKnown RBP eCLIP15.45■□□□□ 0.064e-9■■■■□ 23.7
VPS54-201ENST00000272322 Q8N402 240 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 LRRC17Q8N6Y2 441 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 GAL3ST3Q96A11 431 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 CD180Q99467 661 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 SIDT1Q9NXL6 827 aaKnown RBP15.45■□□□□ 0.06
VPS54-201ENST00000272322 UGT2A1Q9Y4X1 527 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 TP53BP1Q12888 1972 aaPredicted RBP15.45■□□□□ 0.06
VPS54-201ENST00000272322 A0A1W2PRG6 482 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 SNTNA6NMZ2 147 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 CPEP16870 476 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 SCN1BQ07699 218 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 RAB40BQ12829 278 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 PLK5Q496M5 336 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 ZNF362Q5T0B9 420 aaPredicted RBP15.44■□□□□ 0.06
VPS54-201ENST00000272322 AGAP6Q5VW22 663 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 TRIQKQ629K1 86 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 ZNF620Q6ZNG0 422 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 RFLNBQ8N5W9 214 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 OR4K13Q8NH42 304 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 AGAP4Q96P64 663 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 TPSD1Q9BZJ3 242 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 N6AMT1Q9Y5N5 214 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 MEIOCA2RUB1 952 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 CCDC182A6NF36 153 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 RPS15AP62244 130 aaKnown RBP15.44■□□□□ 0.06
VPS54-201ENST00000272322 MLC1Q15049 377 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 NDUFA9Q16795 377 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 MINDY4Q4G0A6 757 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 ATAD3CQ5T2N8 411 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 TMEM64Q6YI46 380 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 LINC00299Q6ZSB3 139 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 RASSF6Q6ZTQ3 369 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 C19orf18Q8NEA5 215 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 ZMYND19Q96E35 227 aaPredicted RBP15.44■□□□□ 0.06
VPS54-201ENST00000272322 FAM210AQ96ND0 272 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 TNFRSF13CQ96RJ3 184 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 TEX12Q9BXU0 123 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 ZNF221Q9UK13 617 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 CBLCQ9ULV8 474 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 LIPT1Q9Y234 373 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 DUXAA6NLW8 204 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 IDH3BO43837 385 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 E2F1Q01094 437 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 ESPNLQ6ZVH7 1005 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 KRT74Q7RTS7 529 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 OR52R1Q8NGF1 315 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 OR52L1Q8NGH7 329 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 SLC37A2Q8TED4 501 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 TMEM239Q8WW34 195 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 OSTF1Q92882 214 aa15.44■□□□□ 0.06
VPS54-201ENST00000272322 PYCR1P32322 319 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 HTR3AP46098 478 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 Q6ZS52 159 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 KLHL36Q8N4N3 616 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 CSNK1A1LQ8N752 337 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 SDR9C7Q8NEX9 313 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 DACT3Q96B18 629 aaPredicted RBP15.43■□□□□ 0.06
VPS54-201ENST00000272322 ZFYVE21Q9BQ24 234 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 BEX1Q9HBH7 125 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 DTX4Q9Y2E6 619 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 MAU2Q9Y6X3 613 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 C4orf47A7E2U8 309 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 CTSEP14091 401 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 ZNF136P52737 540 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 OR12D2P58182 307 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 CDC20Q12834 499 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 CRMP1Q14194 572 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 NFATC4Q14934 902 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 ZSCAN2Q7Z7L9 614 aaPredicted RBP15.43■□□□□ 0.06
VPS54-201ENST00000272322 LMF1Q96S06 567 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms