RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	ZNF136	P52737	540 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	AQP4	P55087	323 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	PIN1	Q13526	163 aa	Predicted RBP	10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	DAG1	Q14118	895 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	GANAB	Q14697	944 aa	Known RBP	10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	OTUD3	Q5T2D3	398 aa	Predicted RBP	10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	ZNF550	Q7Z398	422 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	NUP54	Q7Z3B4	507 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	PIK3C3	Q8NEB9	887 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	OR4C15	Q8NGM1	316 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	GIPC3	Q8TF64	312 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	PHF10	Q8WUB8	498 aa	Known RBP	10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	CNOT9	Q92600	299 aa	Known RBP	10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	PRRC1	Q96M27	445 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	GABARAPL1	Q9H0R8	117 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	GPN2	Q9H9Y4	310 aa	Predicted RBP	10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	ZBTB20	Q9HC78	741 aa	Predicted RBP	10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	USE1	Q9NZ43	259 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	PDP1	Q9P0J1	537 aa	Predicted RBP	10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	TMCC3	Q9ULS5	477 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	C15orf41	Q9Y2V0	281 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	MAGED1	Q9Y5V3	778 aa	Predicted RBP	10.82	□□□□□ -0.68
CLN6-223	ENST00000637823	AK5	Q9Y6K8	562 aa		10.82	□□□□□ -0.68
CLN6-223	ENST00000637823		A0A1W2PRQ8	180 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	DCDC2B	A2VCK2	349 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	GTPBP1	O00178	669 aa	Known RBP	10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	EI24	O14681	340 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	FADS1	O60427	444 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	ICOSLG	O75144	302 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	OR2J2	O76002	312 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	OR5F1	O95221	314 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	CSTA	P01040	98 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	ALPL	P05186	524 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	GKN3P	P0CG01	181 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	LIPC	P11150	499 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	ANXA8	P13928	327 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	ACADS	P16219	412 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	PRKACG	P22612	351 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	PLA2G5	P39877	138 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	CLK3	P49761	638 aa	Known RBP	10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	TAS2R41	P59536	307 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	ST3GAL3	Q11203	375 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	CHAF1B	Q13112	559 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	IL10RA	Q13651	578 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	DGCR6	Q14129	220 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	MICA	Q29983	383 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	EXOC3L2	Q2M3D2	409 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	ENTPD8	Q5MY95	495 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	FNDC7	Q5VTL7	733 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	C16orf47	Q6ZP98	133 aa	Predicted RBP	10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	MRGPRE	Q86SM8	312 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	OFCC1	Q8IZS5	231 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	HS3ST5	Q8IZT8	346 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	ARMC10	Q8N2F6	343 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	LINC00471	Q8N535	108 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	TOR1AIP2	Q8NFQ8	470 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	OR52J3	Q8NH60	311 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	MAGEE2	Q8TD90	523 aa	Predicted RBP	10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	ADAMTS17	Q8TE56	1095 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	TTC9	Q92623	222 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	TMCO6	Q96DC7	493 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	RDH12	Q96NR8	316 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	ALPK1	Q96QP1	1244 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	PSD2	Q9BQI7	771 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	TRIM2	Q9C040	744 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	ANKRD19P	Q9H560	264 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	SMURF2	Q9HAU4	748 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	DNAJB12	Q9NXW2	375 aa	Known RBP	10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	FLRT3	Q9NZU0	649 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	RHCG	Q9UBD6	479 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	TES	Q9UGI8	421 aa	Known RBP	10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	IL17B	Q9UHF5	180 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	RAB26	Q9ULW5	256 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	YARS2	Q9Y2Z4	477 aa	Known RBP	10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	MRPS18B	Q9Y676	258 aa	Known RBP	10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	PCSK5	Q92824	1860 aa		10.81	□□□□□ -0.68
CLN6-223	ENST00000637823	C7orf72	A4D263	438 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	TRAPPC13	A5PLN9	417 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	ARRDC5	A6NEK1	342 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	CPSF4L	A6NMK7	179 aa	Known RBP	10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	ALG1L2	C9J202	215 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	EIF4E2	O60573	245 aa	Known RBP	10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	ZNF354A	O60765	605 aa	Predicted RBP	10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	UGT2B11	O75310	529 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	CYP7B1	O75881	506 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	CCNB2	O95067	398 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	SERPINA7	P05543	415 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	CELA2A	P08217	269 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	FBXO45	P0C2W1	286 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	THRB	P10828	461 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	ITGAM	P11215	1152 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	UBL4A	P11441	157 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	PRG2	P13727	222 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	UQCRB	P14927	111 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	ACAA2	P42765	397 aa	Known RBP	10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	MLF1	P58340	268 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	PPP2R2B	Q00005	443 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	HOXC5	Q00444	222 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	PLAUR	Q03405	335 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	TRAM2	Q15035	370 aa		10.8	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms