RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 TRIM8Q9BZR9 551 aa15.04■□□□□ -0
CCDC28A-202ENST00000611852 OR2B2Q9GZK3 357 aa15.04■□□□□ -0
CCDC28A-202ENST00000611852 EXO5Q9H790 373 aa15.04■□□□□ -0
CCDC28A-202ENST00000611852 PTGES2Q9H7Z7 377 aa15.04■□□□□ -0
CCDC28A-202ENST00000611852 HHATLQ9HCP6 504 aa15.04■□□□□ -0
CCDC28A-202ENST00000611852 CORO2BQ9UQ03 480 aa15.04■□□□□ -0
CCDC28A-202ENST00000611852 MRPS18CQ9Y3D5 142 aaKnown RBP15.04■□□□□ -0
CCDC28A-202ENST00000611852 OR14I1A6ND48 311 aa15.03■□□□□ -0
CCDC28A-202ENST00000611852 H3BNH8 94 aa15.03■□□□□ -0
CCDC28A-202ENST00000611852 ZIC3O60481 467 aa15.03■□□□□ -0
CCDC28A-202ENST00000611852 BCHEP06276 602 aa15.03■□□□□ -0
CCDC28A-202ENST00000611852 DPP4P27487 766 aa15.03■□□□□ -0
CCDC28A-202ENST00000611852 MSX1P28360 303 aa15.03■□□□□ -0
CCDC28A-202ENST00000611852 DSCR4P56555 118 aaPredicted RBP15.03■□□□□ -0
CCDC28A-202ENST00000611852 KCNC4Q03721 635 aa15.03■□□□□ -0
CCDC28A-202ENST00000611852 CAPRIN1Q14444 709 aaKnown RBP15.03■□□□□ -0
CCDC28A-202ENST00000611852 OR14L1PQ8NHC6 308 aa15.03■□□□□ -0
CCDC28A-202ENST00000611852 MAL2Q969L2 176 aa15.03■□□□□ -0
CCDC28A-202ENST00000611852 QRSL1Q9H0R6 528 aaKnown RBP15.03■□□□□ -0
CCDC28A-202ENST00000611852 MTHFD2LQ9H903 347 aaPredicted RBP15.03■□□□□ -0
CCDC28A-202ENST00000611852 A4GALTQ9NPC4 353 aa15.03■□□□□ -0
CCDC28A-202ENST00000611852 TAS2R10Q9NYW0 307 aa15.03■□□□□ -0
CCDC28A-202ENST00000611852 SPRR3Q9UBC9 169 aa15.03■□□□□ -0
CCDC28A-202ENST00000611852 TNFRSF10DQ9UBN6 386 aa15.03■□□□□ -0
CCDC28A-202ENST00000611852 FLNCQ14315 2725 aa15.03■□□□□ -0
CCDC28A-202ENST00000611852 TMEM247A6NEH6 219 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 SERINC4A6NH21 518 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 NPIPA2E9PIF3 369 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 NPIPA3F8WFD2 350 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 FXYD1O00168 92 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 GMFGO60234 142 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 NPPAP01160 153 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 COX4I1P13073 169 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 CRISP3P54108 245 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 MTPNP58546 118 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 ZNF117Q03924 483 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 SELPLGQ14242 412 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 GANABQ14697 944 aaKnown RBP15.02■□□□□ -0
CCDC28A-202ENST00000611852 ZNF630Q2M218 657 aaPredicted RBP15.02■□□□□ -0
CCDC28A-202ENST00000611852 GCNT6Q5T4J0 391 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 CBLN3Q6UW01 205 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 HMGN2P46Q86SG4 172 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 PCYOX1LQ8NBM8 494 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 FAM57AQ8TBR7 257 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 PMM1Q92871 262 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 LRRC58Q96CX6 371 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 C1GALT1C1Q96EU7 318 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 TMEM19Q96HH6 336 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 SH3YL1Q96HL8 342 aaPredicted RBP15.02■□□□□ -0
CCDC28A-202ENST00000611852 TREX2Q9BQ50 279 aaPredicted RBP15.02■□□□□ -0
CCDC28A-202ENST00000611852 SLC39A3Q9BRY0 314 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 THUMPD3Q9BV44 507 aaKnown RBP15.02■□□□□ -0
CCDC28A-202ENST00000611852 CALML5Q9NZT1 146 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 TINAGQ9UJW2 476 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 DKKL1Q9UK85 242 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 SLC6A5Q9Y345 797 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 L3MBTL1Q9Y468 752 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 DSPPQ9NZW4 1301 aa15.02■□□□□ -0
CCDC28A-202ENST00000611852 MED12Q93074 2177 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 TENM4Q6N022 2769 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 TRGV8A0A0C4DH27 118 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 AGAP5A6NIR3 686 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 OIP5O43482 229 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 HCRTR2O43614 444 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 TPOP07202 933 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 ADH7P40394 386 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 GNA13Q14344 377 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 FGFBP1Q14512 234 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 ADRM1Q16186 407 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 C3AR1Q16581 482 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 GKAP1Q5VSY0 366 aaPredicted RBP15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 C1QL3Q5VWW1 255 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 NANOGP8Q6NSW7 305 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 IFNEQ86WN2 208 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 ANKS4BQ8N8V4 417 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 B4GALNT2Q8NHY0 566 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 SARAFQ96BY9 339 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 RCN3Q96D15 328 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 KLHDC3Q9BQ90 382 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 TMEM38AQ9H6F2 299 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 KAT8Q9H7Z6 458 aaKnown RBP15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 NANOGQ9H9S0 305 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 SUCOQ9UBS9 1254 aaKnown RBP15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 ICAM5Q9UMF0 924 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 CARD8Q9Y2G2 431 aa15.02□□□□□ -0.01
CCDC28A-202ENST00000611852 C15orf38-AP3S2A0A0A6YYH1 394 aa15.01□□□□□ -0.01
CCDC28A-202ENST00000611852 GTPBP1O00178 669 aaKnown RBP15.01□□□□□ -0.01
CCDC28A-202ENST00000611852 PRRG2O14669 202 aa15.01□□□□□ -0.01
CCDC28A-202ENST00000611852 ZNF264O43296 627 aa15.01□□□□□ -0.01
CCDC28A-202ENST00000611852 ARAFP10398 606 aa15.01□□□□□ -0.01
CCDC28A-202ENST00000611852 UBL4AP11441 157 aa15.01□□□□□ -0.01
CCDC28A-202ENST00000611852 RPS4Y1P22090 263 aaKnown RBP15.01□□□□□ -0.01
CCDC28A-202ENST00000611852 CA7P43166 264 aa15.01□□□□□ -0.01
CCDC28A-202ENST00000611852 GFRA1P56159 465 aa15.01□□□□□ -0.01
CCDC28A-202ENST00000611852 CRYZQ08257 329 aaKnown RBP15.01□□□□□ -0.01
CCDC28A-202ENST00000611852 NDUFAF6Q330K2 333 aa15.01□□□□□ -0.01
CCDC28A-202ENST00000611852 NHSL2Q5HYW2 709 aa15.01□□□□□ -0.01
CCDC28A-202ENST00000611852 EMC4Q5J8M3 183 aa15.01□□□□□ -0.01
CCDC28A-202ENST00000611852 RPS26P11Q5JNZ5 115 aaPredicted RBP15.01□□□□□ -0.01
CCDC28A-202ENST00000611852 VASNQ6EMK4 673 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms