RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 COL6A2P12110 1019 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 GABRA3P34903 492 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 SFTPDP35247 375 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 FABP6P51161 128 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 ZNF41P51814 821 aaPredicted RBP11.27□□□□□ -0.61
SS18-219ENST00000581570 NCBP2P52298 156 aaKnown RBP eCLIP11.27□□□□□ -0.611e-8■■■□□ 16.9
SS18-219ENST00000581570 CALCOCO2Q13137 446 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 PLPPR5Q32ZL2 321 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 FAM219BQ5XKK7 198 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 TMEM107Q6UX40 140 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 C12orf54Q6X4T0 127 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 RPS27LQ71UM5 84 aaKnown RBP11.27□□□□□ -0.61
SS18-219ENST00000581570 TRABD2AQ86V40 505 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 LILRA2Q8N149 483 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 POC1BQ8TC44 478 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 C16orf78Q8WTQ4 265 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 CPNE4Q96A23 557 aaPredicted RBP11.27□□□□□ -0.61
SS18-219ENST00000581570 SRXN1Q9BYN0 137 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 VPS11Q9H270 941 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 L2HGDHQ9H9P8 463 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 C3orf14Q9HBI5 128 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 GP6Q9HCN6 339 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 NPAP1Q9NZP6 1156 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 TMCO1Q9UM00 188 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 NFU1Q9UMS0 254 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 GXYLT2A0PJZ3 443 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 HMX2A2RU54 273 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 MYO1GB0I1T2 1018 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 ALG1L2C9J202 215 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 H7C417 338 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 UPK1AO00322 258 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 KIAA0513O60268 411 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 SMIM24O75264 130 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 SLITRK5O94991 958 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 KCNH1O95259 989 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 IGKV1D-16P01601 117 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 JUNP05412 331 aaKnown RBP11.26□□□□□ -0.61
SS18-219ENST00000581570 RBP1P09455 135 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 HSD3B1P14060 373 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 CHN1P15882 459 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 TSPAN8P19075 237 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 HSD3B2P26439 372 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 CFPP27918 469 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 SHC1P29353 583 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 TYK2P29597 1187 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 STX2P32856 288 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 EFNA4P52798 201 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 MANFP55145 182 aaKnown RBP11.26□□□□□ -0.61
SS18-219ENST00000581570 CDH13P55290 713 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 RAE1P78406 368 aaKnown RBP11.26□□□□□ -0.61
SS18-219ENST00000581570 MRPS25P82663 173 aaKnown RBP11.26□□□□□ -0.61
SS18-219ENST00000581570 SLC18A2Q05940 514 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 NAB1Q13506 487 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 GGTLC2Q14390 218 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 TIMM23BQ5SRD1 257 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 SLC22A25Q6T423 547 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 Q6ZT83 130 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 FCRLAQ7L513 359 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 SSX8Q7RTT4 187 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 MEX3DQ86XN8 651 aaKnown RBP11.26□□□□□ -0.61
SS18-219ENST00000581570 PLD6Q8N2A8 252 aaKnown RBP11.26□□□□□ -0.61
SS18-219ENST00000581570 RFLNBQ8N5W9 214 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 GATSQ8NAP1 163 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 ACTRT2Q8TDY3 377 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 MSI2Q96DH6 328 aaKnown RBP11.26□□□□□ -0.61
SS18-219ENST00000581570 MRRFQ96E11 262 aaKnown RBP11.26□□□□□ -0.61
SS18-219ENST00000581570 LMF2Q9BU23 707 aaKnown RBP11.26□□□□□ -0.61
SS18-219ENST00000581570 SHCBP1LQ9BZQ2 653 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 DPH5Q9H2P9 285 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 EML4Q9HC35 981 aaKnown RBP11.26□□□□□ -0.61
SS18-219ENST00000581570 DDX18Q9NVP1 670 aaKnown RBP11.26□□□□□ -0.61
SS18-219ENST00000581570 RNF14Q9UBS8 474 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 PRSS50Q9UI38 385 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 MGAT4BQ9UQ53 548 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 PCNX3Q9H6A9 2034 aa11.26□□□□□ -0.61
SS18-219ENST00000581570 GOLGA8QA0A0J9YX86 632 aa11.25□□□□□ -0.61
SS18-219ENST00000581570 GOLGA8OA6NCC3 632 aa11.25□□□□□ -0.61
SS18-219ENST00000581570 GOLGA8NF8WBI6 632 aa11.25□□□□□ -0.61
SS18-219ENST00000581570 CCDC188H7C350 402 aa11.25□□□□□ -0.61
SS18-219ENST00000581570 GOLGA8RI6L899 631 aa11.25□□□□□ -0.61
SS18-219ENST00000581570 MANBAO00462 879 aa11.25□□□□□ -0.61
SS18-219ENST00000581570 TCF21O43680 179 aa11.25□□□□□ -0.61
SS18-219ENST00000581570 OR4F21O95013 312 aa11.25□□□□□ -0.61
SS18-219ENST00000581570 PSMG1O95456 288 aa11.25□□□□□ -0.61
SS18-219ENST00000581570 OXSR1O95747 527 aaPredicted RBP11.25□□□□□ -0.61
SS18-219ENST00000581570 GGT1P19440 569 aa11.25□□□□□ -0.61
SS18-219ENST00000581570 OR3A2P47893 321 aa11.25□□□□□ -0.61
SS18-219ENST00000581570 PRSS53Q2L4Q9 553 aa11.25□□□□□ -0.61
SS18-219ENST00000581570 TCHHL1Q5QJ38 904 aaPredicted RBP11.25□□□□□ -0.61
SS18-219ENST00000581570 TMEM108Q6UXF1 575 aa11.25□□□□□ -0.61
SS18-219ENST00000581570 P2RY8Q86VZ1 359 aa11.25□□□□□ -0.61
SS18-219ENST00000581570 CREG2Q8IUH2 290 aa11.25□□□□□ -0.61
SS18-219ENST00000581570 OR2L13Q8N349 312 aa11.25□□□□□ -0.61
SS18-219ENST00000581570 OR4C3Q8NH37 302 aa11.25□□□□□ -0.61
SS18-219ENST00000581570 PIK3R3Q92569 461 aa11.25□□□□□ -0.61
SS18-219ENST00000581570 C1orf159Q96HA4 380 aa11.25□□□□□ -0.61
SS18-219ENST00000581570 SH3YL1Q96HL8 342 aaPredicted RBP11.25□□□□□ -0.61
SS18-219ENST00000581570 C12orf65Q9H3J6 166 aaKnown RBP11.25□□□□□ -0.61
SS18-219ENST00000581570 ZNF225Q9UK10 706 aa11.25□□□□□ -0.61
SS18-219ENST00000581570 TTC36A6NLP5 189 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms