RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 SZRD1Q7Z422 152 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 BTLAQ7Z6A9 289 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 CDC20BQ86Y33 519 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 MEIOBQ8N635 442 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 COX18Q8N8Q8 333 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 GATSQ8NAP1 163 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 FNDC9Q8TBE3 224 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 SFXN5Q8TD22 340 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 DUSP26Q9BV47 211 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 PINK1Q9BXM7 581 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 POLDIP3Q9BY77 421 aaKnown RBP13.37□□□□□ -0.27
CLN3-213ENST00000565047 CLEC4MQ9H2X3 399 aaPredicted RBP13.37□□□□□ -0.27
CLN3-213ENST00000565047 NEUROD4Q9HD90 331 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 MED17Q9NVC6 651 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 NOP53Q9NZM5 478 aaKnown RBP13.37□□□□□ -0.27
CLN3-213ENST00000565047 PACSIN3Q9UKS6 424 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 ICAM5Q9UMF0 924 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 EIF3LQ9Y262 564 aaKnown RBP13.37□□□□□ -0.27
CLN3-213ENST00000565047 VDAC3Q9Y277 283 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 ZNF175Q9Y473 711 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 A0A1W2PPR1 153 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 ESPNB1AK53 854 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 ADAMDEC1O15204 470 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 OIP5O43482 229 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 EFNA2O43921 213 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 GMFGO60234 142 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 BGNP21810 368 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 SLC6A8P48029 635 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 RPL14P50914 215 aaKnown RBP13.36□□□□□ -0.27
CLN3-213ENST00000565047 WDR4P57081 412 aaKnown RBP13.36□□□□□ -0.27
CLN3-213ENST00000565047 MAD2L1Q13257 205 aaPredicted RBP13.36□□□□□ -0.27
CLN3-213ENST00000565047 LSM12Q3MHD2 195 aaKnown RBP13.36□□□□□ -0.27
CLN3-213ENST00000565047 CEP85LQ5SZL2 805 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 OR2A2Q6IF42 318 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 CBLN3Q6UW01 205 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 MISPQ8IVT2 679 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 LRRC34Q8IZ02 419 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 CLECL1Q8IZS7 167 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 OR8J2Q8NGG1 315 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 OR56A1Q8NGH5 318 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 NINJ1Q92982 152 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 ZBTB8AQ96BR9 441 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 ZBTB9Q96C00 473 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 DACH2Q96NX9 599 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 PRPF18Q99633 342 aaKnown RBP13.36□□□□□ -0.27
CLN3-213ENST00000565047 PLEKHF2Q9H8W4 249 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 HHATLQ9HCP6 504 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 ST6GALNAC2Q9UJ37 374 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 KCNE5Q9UJ90 142 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 SNX8Q9Y5X2 465 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 MPDZO75970 2070 aa13.36□□□□□ -0.27
CLN3-213ENST00000565047 NUP214P35658 2090 aaPredicted RBP13.36□□□□□ -0.27
CLN3-213ENST00000565047 RNASET2O00584 256 aaKnown RBP13.35□□□□□ -0.27
CLN3-213ENST00000565047 SEC14L5O43304 696 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 SOX30O94993 753 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 HRGP04196 525 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 TUBBP07437 444 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 MYZAPP0CAP1 466 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 IL11P20809 199 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 RAC1P63000 192 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 ZNF117Q03924 483 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 FAM27E3Q08E93 113 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 PON3Q15166 354 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 DCST2Q5T1A1 773 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 OR4F3Q6IEY1 312 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 MTERF4Q7Z6M4 381 aaKnown RBP13.35□□□□□ -0.27
CLN3-213ENST00000565047 CHDHQ8NE62 594 aaPredicted RBP13.35□□□□□ -0.27
CLN3-213ENST00000565047 OR5AK3PQ8NH89 298 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 B4GALNT2Q8NHY0 566 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 PPP1R14CQ8TAE6 165 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 ADAMTS15Q8TE58 950 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 JADE3Q92613 823 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 MOAP1Q96BY2 351 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 PPP1R36Q96LQ0 422 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 OR7D2Q96RA2 312 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 SDF2Q99470 211 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 MEAF6Q9HAF1 191 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 PNPOQ9NVS9 261 aa13.35□□□□□ -0.27
CLN3-213ENST00000565047 NPIPA5A0A0B4J1W7 369 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 A0A0J9YW62 118 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 NPIPA7E9PJI5 369 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 ETV2O00321 342 aaPredicted RBP13.34□□□□□ -0.27
CLN3-213ENST00000565047 SCDO00767 359 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 DNAJA2O60884 412 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 SNNO75324 88 aaPredicted RBP13.34□□□□□ -0.27
CLN3-213ENST00000565047 GOSR1O95249 250 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 NTN1O95631 604 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 C1QCP02747 245 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 NPIPA8P0DM63 369 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 CD8BP10966 210 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 ATP12AP54707 1039 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 BST1Q10588 318 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 TP53BP2Q13625 1128 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 OGFOD2Q6N063 350 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 C22orf34Q6ZV56 151 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 CHMP1BQ7LBR1 199 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 P4HA3Q7Z4N8 544 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 C6orf120Q7Z4R8 191 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 CLEC4FQ8N1N0 589 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 OR5D16Q8NGK9 328 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms