RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 MFSD12Q6NUT3 480 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 C4orf33Q8N1A6 199 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 CDRT4Q8N9R6 151 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 PPP1R14CQ8TAE6 165 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 FAM110BQ8TC76 370 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 UBLCP1Q8WVY7 318 aaPredicted RBP10.42□□□□□ -0.74
USP3-220ENST00000561381 PIGTQ969N2 578 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 ARSGQ96EG1 525 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 ZBED6CLQ96FA7 236 aaPredicted RBP10.42□□□□□ -0.74
USP3-220ENST00000561381 PERPQ96FX8 193 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 ZNF764Q96H86 408 aaPredicted RBP10.42□□□□□ -0.74
USP3-220ENST00000561381 SH3YL1Q96HL8 342 aaPredicted RBP10.42□□□□□ -0.74
USP3-220ENST00000561381 METTL2AQ96IZ6 378 aaKnown RBP10.42□□□□□ -0.74
USP3-220ENST00000561381 ADGRG7Q96K78 797 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 Q96MF0 132 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 RNF145Q96MT1 663 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 MS4A4EQ96PG1 132 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 GATA5Q9BWX5 397 aaPredicted RBP10.42□□□□□ -0.74
USP3-220ENST00000561381 PRRG4Q9BZD6 226 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 MED17Q9NVC6 651 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 NTMQ9P121 344 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 GIMAP2Q9UG22 337 aa10.42□□□□□ -0.74
USP3-220ENST00000561381 RAI1Q7Z5J4 1906 aaPredicted RBP10.42□□□□□ -0.74
USP3-220ENST00000561381 USF3Q68DE3 2245 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 A0A0J9YW62 118 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.41□□□□□ -0.74
USP3-220ENST00000561381 TRIM64A6NGJ6 449 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 TRIM64BA6NI03 449 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 TMEM233B4DJY2 109 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 COPEO14579 308 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 SMAD7O15105 426 aaKnown RBP10.41□□□□□ -0.74
USP3-220ENST00000561381 LSM1O15116 133 aaKnown RBP10.41□□□□□ -0.74
USP3-220ENST00000561381 TBX19O60806 448 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 PLGP00747 810 aaPredicted RBP10.41□□□□□ -0.74
USP3-220ENST00000561381 CHRNGP07510 517 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 NGFRP08138 427 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 FCGR2AP12318 317 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 ZNF17P17021 662 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 SHC1P29353 583 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 RNF144AP50876 292 aaPredicted RBP10.41□□□□□ -0.74
USP3-220ENST00000561381 OCRLQ01968 901 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 FGFBP1Q14512 234 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 PCLAFQ15004 111 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 CD226Q15762 336 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 GALNTL6Q49A17 601 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 VPS26BQ4G0F5 336 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 EXOSC6Q5RKV6 272 aaKnown RBP10.41□□□□□ -0.74
USP3-220ENST00000561381 STAC2Q6ZMT1 411 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 YTHDF3Q7Z739 585 aaKnown RBP10.41□□□□□ -0.74
USP3-220ENST00000561381 WDR75Q8IWA0 830 aaKnown RBP10.41□□□□□ -0.74
USP3-220ENST00000561381 LRRC75A-AS1Q8N1F1 130 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 GTPBP8Q8N3Z3 284 aaPredicted RBP10.41□□□□□ -0.74
USP3-220ENST00000561381 OR6K3Q8NGY3 331 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 CEP70Q8NHQ1 597 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 ZFP28Q8NHY6 868 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 POC1BQ8TC44 478 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 JADE3Q92613 823 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 GMPPAQ96IJ6 420 aaPredicted RBP10.41□□□□□ -0.74
USP3-220ENST00000561381 COX4I2Q96KJ9 171 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 PLSCR4Q9NRQ2 329 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 SIRT3Q9NTG7 399 aaPredicted RBP10.41□□□□□ -0.74
USP3-220ENST00000561381 EMC9Q9Y3B6 208 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 DNAJC15Q9Y5T4 150 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 ABCA2Q9BZC7 2435 aa10.41□□□□□ -0.74
USP3-220ENST00000561381 NUP214P35658 2090 aaPredicted RBP10.4□□□□□ -0.74
USP3-220ENST00000561381 A0A087WZY1 265 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 NPIPA5A0A0B4J1W7 369 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 NPIPA7E9PJI5 369 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 KIF2AO00139 706 aaPredicted RBP10.4□□□□□ -0.74
USP3-220ENST00000561381 ADAMDEC1O15204 470 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 KLF4O43474 513 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 OIP5O43482 229 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 SS18L1O75177 396 aaPredicted RBP10.4□□□□□ -0.74
USP3-220ENST00000561381 NTN1O95631 604 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 PLAUP00749 431 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 HEXAP06865 529 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 ALOX5P09917 674 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 NPIPA8P0DM63 369 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 BCKDHAP12694 445 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 FPR1P21462 350 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 PRIM2P49643 509 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 ZNF41P51814 821 aaPredicted RBP10.4□□□□□ -0.74
USP3-220ENST00000561381 CTBP2P56545 445 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 RAC1P63000 192 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 CPTPQ5TA50 214 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 KANK2Q63ZY3 851 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 TDRPQ86YL5 185 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 COX18Q8N8Q8 333 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 OR7A2PQ8NGA2 310 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 OR2V1Q8NHB1 315 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 NUDT8Q8WV74 236 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 ROBO4Q8WZ75 1007 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 ZBTB8AQ96BR9 441 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 FAM120BQ96EK7 910 aaKnown RBP10.4□□□□□ -0.74
USP3-220ENST00000561381 C12orf49Q9H741 205 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 ACSS1Q9NUB1 689 aaPredicted RBP10.4□□□□□ -0.74
USP3-220ENST00000561381 GIN1Q9NXP7 522 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 MCTS1Q9ULC4 181 aaKnown RBP10.4□□□□□ -0.74
USP3-220ENST00000561381 CSPG4Q6UVK1 2322 aa10.4□□□□□ -0.74
USP3-220ENST00000561381 UQCRHLA0A096LP55 91 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms