RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, human

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS33B-205	ENST00000556096	ZNF559	Q9BR84	538 aa		13.6	□□□□□ -0.23
VPS33B-205	ENST00000556096	SLC7A5P2	Q9GIP4	190 aa		13.6	□□□□□ -0.23
VPS33B-205	ENST00000556096	ERVK-18	Q9QC07	812 aa		13.6	□□□□□ -0.23
VPS33B-205	ENST00000556096	RARRES3	Q9UL19	164 aa		13.6	□□□□□ -0.23
VPS33B-205	ENST00000556096	NTNG1	Q9Y2I2	539 aa		13.6	□□□□□ -0.23
VPS33B-205	ENST00000556096	PCDHGB2	Q9Y5G2	931 aa		13.6	□□□□□ -0.23
VPS33B-205	ENST00000556096	CLCA3P	Q9Y6N3	262 aa		13.6	□□□□□ -0.23
VPS33B-205	ENST00000556096	DMXL1	Q9Y485	3027 aa		13.6	□□□□□ -0.23
VPS33B-205	ENST00000556096	ASCC3	Q8N3C0	2202 aa	Known RBP	13.6	□□□□□ -0.23
VPS33B-205	ENST00000556096	IGLV3-12	A0A075B6K2	115 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	SH3D21	A4FU49	640 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096		H3BN98	237 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	RGS10	O43665	173 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	SEC14L2	O76054	403 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	DDAH2	O95865	285 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	ONECUT2	O95948	504 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	PRG2	P13727	222 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	CD59	P13987	128 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	GSTT1	P30711	240 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	OMP	P47874	163 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	SNRPG	P62308	76 aa	Known RBP	13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	LSM11	P83369	360 aa	Known RBP eCLIP	13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	PLAUR	Q03405	335 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	PIGF	Q07326	219 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	FGFBP1	Q14512	234 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	OR1Q1	Q15612	314 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	GTF2IRD2B	Q6EKJ0	949 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	MBOAT2	Q6ZWT7	520 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	COX15	Q7KZN9	410 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	PRSS48	Q7RTY5	328 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	GTF2IRD2	Q86UP8	949 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	BPHL	Q86WA6	291 aa	Predicted RBP	13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	OR14A16	Q8NHC5	309 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	ZNF721	Q8TF20	911 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	DAZL	Q92904	295 aa	Known RBP	13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	SIGLEC11	Q96RL6	698 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	GPA33	Q99795	319 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	VN1R1	Q9GZP7	353 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	SLC22A11	Q9NSA0	550 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	FKBP14	Q9NWM8	211 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	SIDT1	Q9NXL6	827 aa	Known RBP	13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	PSORS1C1	Q9UIG5	152 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	SLC7A7	Q9UM01	511 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	OR10H1	Q9Y4A9	318 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	NTN3	O00634	580 aa	Predicted RBP	13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	POLR1C	O15160	346 aa	Predicted RBP	13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	SOX14	O95416	240 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	HBQ1	P09105	142 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	GKN3P	P0CG01	181 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	HTR2A	P28223	471 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	RFX3	P48380	749 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	EFNA3	P52797	238 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	DCAF7	P61962	342 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	NSDHL	Q15738	373 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	ZNF613	Q6PF04	617 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	B3GNT6	Q6ZMB0	384 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	RASSF6	Q6ZTQ3	369 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	PTCHD4	Q6ZW05	846 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	SLITRK4	Q8IW52	837 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	RNF113B	Q8IZP6	322 aa	Known RBP	13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	SVOP	Q8N4V2	548 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	ZNF420	Q8TAQ5	688 aa	Predicted RBP	13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	SLC2A12	Q8TD20	617 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	MUL1	Q969V5	352 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	GFM1	Q96RP9	751 aa	Known RBP	13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	PRSS27	Q9BQR3	290 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	CCDC90B	Q9GZT6	254 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	PTTG2	Q9NZH5	202 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	MKL2	Q9ULH7	1088 aa		13.59	□□□□□ -0.23
VPS33B-205	ENST00000556096	CFAP54	Q96N23	3096 aa		13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	CLCA1	A8K7I4	914 aa		13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096		A8MUA0	341 aa		13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	KLF4	O43474	513 aa		13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	LYPD3	O95274	346 aa		13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	IGFBP1	P08833	259 aa	Predicted RBP	13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	FPR3	P25089	353 aa		13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	DCK	P27707	260 aa		13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	STAT5A	P42229	794 aa		13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	GRK6	P43250	576 aa		13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	GIPR	P48546	466 aa		13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	CDK5	Q00535	292 aa		13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	MVK	Q03426	396 aa		13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	EMX1	Q04741	257 aa	Predicted RBP	13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	TRA2A	Q13595	282 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	CLVS1	Q8IUQ0	354 aa	Predicted RBP	13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	CNOT9	Q92600	299 aa	Known RBP	13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	MYDGF	Q969H8	173 aa		13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	NMD3	Q96D46	503 aa	Known RBP	13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	HOXD1	Q9GZZ0	328 aa		13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	SYNDIG1	Q9H7V2	258 aa		13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	TMEM27	Q9HBJ8	222 aa		13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	SLC25A19	Q9HC21	320 aa		13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	KRCC1	Q9NPI7	259 aa	Predicted RBP	13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	CLN6	Q9NWW5	311 aa		13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	DNAJB12	Q9NXW2	375 aa	Known RBP	13.58	□□□□□ -0.24
VPS33B-205	ENST00000556096	FRG2C	A6NGY1	282 aa		13.57	□□□□□ -0.24
VPS33B-205	ENST00000556096	BCAS1	O75363	584 aa	Predicted RBP	13.57	□□□□□ -0.24
VPS33B-205	ENST00000556096	SCRG1	O75711	98 aa		13.57	□□□□□ -0.24
VPS33B-205	ENST00000556096	IL33	O95760	270 aa		13.57	□□□□□ -0.24
VPS33B-205	ENST00000556096	ATXN8OS	P0DMR3	200 aa		13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms