RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 ANAPC2Q9UJX6 822 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 ZNF232Q9UNY5 417 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 ZNF443Q9Y2A4 671 aaPredicted RBP13.67□□□□□ -0.22
NUP54-213ENST00000513352 KMT2BQ9UMN6 2715 aaPredicted RBP13.67□□□□□ -0.22
NUP54-213ENST00000513352 DSPPQ9NZW4 1301 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 AGAP5A6NIR3 686 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 LRRC3CA6NJW4 275 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 SNPHO15079 494 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 HCRTR2O43614 444 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 TRIM3O75382 744 aaPredicted RBP13.66□□□□□ -0.22
NUP54-213ENST00000513352 GMNNO75496 209 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 ATP5HO75947 161 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 NUDT14O95848 222 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 CSTAP01040 98 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 CRYABP02511 175 aaKnown RBP13.66□□□□□ -0.22
NUP54-213ENST00000513352 OPN1SWP03999 348 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 PRB1P04280 392 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 ZNF24P17028 368 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 TCEA1P23193 301 aaKnown RBP13.66□□□□□ -0.22
NUP54-213ENST00000513352 ELAVL4P26378 380 aaKnown RBP13.66□□□□□ -0.22
NUP54-213ENST00000513352 GAS1P54826 345 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 ALDH6A1Q02252 535 aaKnown RBP13.66□□□□□ -0.22
NUP54-213ENST00000513352 C17orf67Q0P5P2 114 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 DNAL1Q4LDG9 190 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 LRRC23Q53EV4 343 aaPredicted RBP13.66□□□□□ -0.22
NUP54-213ENST00000513352 ZNF311Q5JNZ3 666 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 RPUSD3Q6P087 351 aaKnown RBP13.66□□□□□ -0.22
NUP54-213ENST00000513352 EIF3MQ7L2H7 374 aaKnown RBP13.66□□□□□ -0.22
NUP54-213ENST00000513352 SLC22A16Q86VW1 577 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 PLCZ1Q86YW0 608 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 ARMC8Q8IUR7 673 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 MISPQ8IVT2 679 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 ZFP62Q8NB50 900 aaPredicted RBP13.66□□□□□ -0.22
NUP54-213ENST00000513352 TNIP2Q8NFZ5 429 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 RNF138Q8WVD3 245 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 PMM1Q92871 262 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 GNRHR2Q96P88 292 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 BBC3Q96PG8 261 aaPredicted RBP13.66□□□□□ -0.22
NUP54-213ENST00000513352 TSPAN10Q9H1Z9 355 aaPredicted RBP13.66□□□□□ -0.22
NUP54-213ENST00000513352 DSN1Q9H410 356 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 BCL2L10Q9HD36 194 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 TAS2R1Q9NYW7 299 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 MED11Q9P086 117 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 SEC14L3Q9UDX4 400 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 DKKL1Q9UK85 242 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 CARD8Q9Y2G2 431 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 IFT52Q9Y366 437 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 HRH3Q9Y5N1 445 aa13.66□□□□□ -0.22
NUP54-213ENST00000513352 ZFYVE26Q68DK2 2539 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 CLDN24A6NM45 220 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 SERPINB7O75635 380 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 PDE5AO76074 875 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 SORBS2O94875 1100 aaKnown RBP13.65□□□□□ -0.22
NUP54-213ENST00000513352 PABPC4LP0CB38 370 aaKnown RBP13.65□□□□□ -0.22
NUP54-213ENST00000513352 UBTFL6P0CB48 400 aaPredicted RBP13.65□□□□□ -0.22
NUP54-213ENST00000513352 NID1P14543 1247 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 ETS2P15036 469 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 ENDOUP21128 410 aaKnown RBP13.65□□□□□ -0.22
NUP54-213ENST00000513352 RPS4Y1P22090 263 aaKnown RBP13.65□□□□□ -0.22
NUP54-213ENST00000513352 RASSF2P50749 326 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 KCNJ10P78508 379 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 GABPB1Q06547 395 aaPredicted RBP13.65□□□□□ -0.22
NUP54-213ENST00000513352 FOXO1Q12778 655 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 FGFBP1Q14512 234 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 PRR30Q53SZ7 412 aaPredicted RBP13.65□□□□□ -0.22
NUP54-213ENST00000513352 TIGD3Q6B0B8 471 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 ZNF836Q6ZNA1 936 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 PATL1Q86TB9 770 aaKnown RBP13.65□□□□□ -0.22
NUP54-213ENST00000513352 FAM156AQ8NDB6 213 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 OIT3Q8WWZ8 545 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 DTNBP1Q96EV8 351 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 TAAR6Q96RI8 345 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 THTPAQ9BU02 230 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 C1orf21Q9H246 121 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 ARMC7Q9H6L4 198 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 HHATLQ9HCP6 504 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 EGFL7Q9UHF1 273 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 SLC13A4Q9UKG4 626 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 RALYQ9UKM9 306 aaKnown RBP13.65□□□□□ -0.22
NUP54-213ENST00000513352 SLC35A3Q9Y2D2 325 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 C15orf41Q9Y2V0 281 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 GPC6Q9Y625 555 aaPredicted RBP13.65□□□□□ -0.22
NUP54-213ENST00000513352 IGSF10Q6WRI0 2623 aa13.65□□□□□ -0.22
NUP54-213ENST00000513352 NCKAP5O14513 1909 aa13.64□□□□□ -0.23
NUP54-213ENST00000513352 FREM3P0C091 2139 aa13.64□□□□□ -0.23
NUP54-213ENST00000513352 PRORSD1PA6NEY8 169 aa13.64□□□□□ -0.23
NUP54-213ENST00000513352 FAM47E-STBD1D6RA91 191 aa13.64□□□□□ -0.23
NUP54-213ENST00000513352 CXCR6O00574 342 aa13.64□□□□□ -0.23
NUP54-213ENST00000513352 ZNF264O43296 627 aa13.64□□□□□ -0.23
NUP54-213ENST00000513352 OIP5O43482 229 aa13.64□□□□□ -0.23
NUP54-213ENST00000513352 CDC40O60508 579 aaKnown RBP eCLIP13.64□□□□□ -0.23
NUP54-213ENST00000513352 TRAPPC6AO75865 159 aa13.64□□□□□ -0.23
NUP54-213ENST00000513352 THBS1P07996 1170 aa13.64□□□□□ -0.23
NUP54-213ENST00000513352 RFPL3SP0C7P2 107 aa13.64□□□□□ -0.23
NUP54-213ENST00000513352 NCK1P16333 377 aa13.64□□□□□ -0.23
NUP54-213ENST00000513352 MSX2P35548 267 aaPredicted RBP13.64□□□□□ -0.23
NUP54-213ENST00000513352 MAGEA5P43359 124 aa13.64□□□□□ -0.23
NUP54-213ENST00000513352 ZNF117Q03924 483 aa13.64□□□□□ -0.23
NUP54-213ENST00000513352 VEZF1Q14119 521 aa13.64□□□□□ -0.23
NUP54-213ENST00000513352 EIPR1Q53HC9 387 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms