RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 RHAGQ02094 409 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 OC90Q02509 493 aaPredicted RBP3.54□□□□□ -1.84
USP54-217ENST00000498213 TGM3Q08188 693 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 KIF5AQ12840 1032 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 SERTAD2Q14140 314 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 FGFBP1Q14512 234 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 ABRAXAS2Q15018 415 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 TPSAB1Q15661 275 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 CCNG2Q16589 344 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 CLEC12BQ2HXU8 276 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 DEFB110Q30KQ9 67 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 LCE1EQ5T753 118 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 ASPHD1Q5U4P2 390 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 DCAF12L2Q5VW00 463 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 CAPN13Q6MZZ7 669 aaPredicted RBP3.54□□□□□ -1.84
USP54-217ENST00000498213 NEPROQ6NW34 567 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 PAPD4Q6PIY7 484 aaKnown RBP3.54□□□□□ -1.84
USP54-217ENST00000498213 OPN5Q6U736 354 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 LCTLQ6UWM7 567 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 B3GNT6Q6ZMB0 384 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 PPP1R21Q6ZMI0 780 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 ZNF534Q76KX8 674 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 TRILQ7L0X0 811 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 SSX8Q7RTT4 187 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 GALNTL5Q7Z4T8 443 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 ANKRD37Q7Z713 158 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 ASPGQ86U10 573 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 TRIM73Q86UV7 250 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 SLC13A5Q86YT5 568 aaPredicted RBP3.54□□□□□ -1.84
USP54-217ENST00000498213 LRRC8AQ8IWT6 810 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 ZNF595Q8IYB9 648 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 BEST3Q8N1M1 668 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 LIX1Q8N485 282 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 TMEM217Q8N7C4 229 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 GBP7Q8N8V2 638 aaPredicted RBP3.54□□□□□ -1.84
USP54-217ENST00000498213 CCDC89Q8N998 374 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 MFSD9Q8NBP5 474 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 MORN4Q8NDC4 146 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 B3GNT7Q8NFL0 401 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 OR5M9Q8NGP3 310 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 OR51Q1Q8NH59 317 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 NUBPLQ8TB37 319 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 NT5CQ8TCD5 201 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 NUDCD2Q8WVJ2 157 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 SKA2Q8WVK7 121 aaPredicted RBP3.54□□□□□ -1.84
USP54-217ENST00000498213 SMPDL3BQ92485 455 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 LPGAT1Q92604 370 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 ANP32BQ92688 251 aaKnown RBP3.54□□□□□ -1.84
USP54-217ENST00000498213 C3orf49Q96BT1 292 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 C8orf44Q96CB5 159 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 VMP1Q96GC9 406 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 PDLIM5Q96HC4 596 aaKnown RBP3.54□□□□□ -1.84
USP54-217ENST00000498213 ART5Q96L15 291 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 BIRC8Q96P09 236 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 CCDC77Q9BR77 488 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 PELOQ9BRX2 385 aaKnown RBP3.54□□□□□ -1.84
USP54-217ENST00000498213 GOLPH3Q9H4A6 298 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 EHD1Q9H4M9 534 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 NT5DC2Q9H857 520 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 IL1RL2Q9HB29 575 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 XAB2Q9HCS7 855 aaKnown RBP3.54□□□□□ -1.84
USP54-217ENST00000498213 SEPSECSQ9HD40 501 aaKnown RBP3.54□□□□□ -1.84
USP54-217ENST00000498213 ACKR4Q9NPB9 350 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 ANKRD10Q9NXR5 420 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 CNIH4Q9P003 139 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 FETUBQ9UGM5 382 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 PTBP2Q9UKA9 531 aaKnown RBP3.54□□□□□ -1.84
USP54-217ENST00000498213 PTGDR2Q9Y5Y4 395 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 MPDZO75970 2070 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 A0A0A6YYC8 382 aaPredicted RBP3.53□□□□□ -1.84
USP54-217ENST00000498213 IGKV1-8A0A0C4DH67 115 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 TCRBV7S3A2A0A539 114 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 FAM170AA1A519 330 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 MACROD2A1Z1Q3 448 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 TMEM247A6NEH6 219 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 MS4A18H0YCH9 400 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 I3L1I5 382 aaPredicted RBP3.53□□□□□ -1.84
USP54-217ENST00000498213 TCF21O43680 179 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 BUD23O43709 281 aaKnown RBP3.53□□□□□ -1.84
USP54-217ENST00000498213 LIASO43766 372 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 GALR3O60755 368 aaPredicted RBP3.53□□□□□ -1.84
USP54-217ENST00000498213 ZFAND5O76080 213 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 GLSO94925 669 aaPredicted RBP3.53□□□□□ -1.84
USP54-217ENST00000498213 SNX4O95219 450 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 METTL18O95568 372 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 SLC16A8O95907 504 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 EIF2S1P05198 315 aaKnown RBP3.53□□□□□ -1.84
USP54-217ENST00000498213 CRHP06850 196 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 APRTP07741 180 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 CCDC175P0C221 793 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 RNH1P13489 461 aaKnown RBP3.53□□□□□ -1.84
USP54-217ENST00000498213 ALOX12P18054 663 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 CNR1P21554 472 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 HOXD3P31249 432 aaPredicted RBP3.53□□□□□ -1.84
USP54-217ENST00000498213 TNFSF8P32971 234 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 GCKP35557 465 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 SSR4P51571 173 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 NR0B1P51843 470 aaKnown RBP3.53□□□□□ -1.84
USP54-217ENST00000498213 ATP5J2P56134 94 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 OR4D2P58180 307 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms