RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 MYNNQ9NPC7 610 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 TMEM138Q9NPI0 162 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 KRCC1Q9NPI7 259 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 DYRK4Q9NR20 520 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ACSS1Q9NUB1 689 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 FAM118AQ9NWS6 357 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 DPP3Q9NY33 737 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 OR12D3Q9UGF7 316 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 PRG3Q9Y2Y8 225 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 CDY1Q9Y6F8 540 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 MYO9BQ13459 2157 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 TBC1D3KA0A087X1G2 549 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 E7EWF7 191 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 F5H6K3 240 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 SULT1C2O00338 296 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 PEX12O00623 359 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 OGG1O15527 345 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF208O43345 1280 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF780AO75290 641 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 RFPL2O75678 378 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 CNMDO75829 334 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 WDR47O94967 919 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 NDUFB10O96000 172 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 GASTP01350 101 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 APRTP07741 180 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 CHRM2P08172 466 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 GZMHP20718 246 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 IMPDH1P20839 514 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 DRD1P21728 446 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 UBA1P22314 1058 aaKnown RBP4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 MYF6P23409 242 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC6A2P23975 617 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 MARCKSP29966 332 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 IDH3GP51553 393 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 NUDT6P53370 316 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 RRADP55042 308 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 YWHAGP61981 247 aaKnown RBP eCLIP4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 VLDLRP98155 873 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 GTF2BQ00403 316 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 KLRC3Q07444 240 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 PDIA2Q13087 525 aaKnown RBP4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 KRT81Q14533 505 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 IL11RAQ14626 422 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 P2RY14Q15391 338 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 IMPG1Q17R60 797 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 KNOP1Q1ED39 458 aaKnown RBP4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 BSXQ3C1V8 233 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 ZFP69Q49AA0 526 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 C14orf28Q4W4Y0 310 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 CERCAMQ5T4B2 595 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 ABHD17BQ5VST6 288 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 CST9LP1Q5W188 147 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 TIGD3Q6B0B8 471 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 ULK3Q6PHR2 472 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 NHLRC1Q6VVB1 395 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 HSDL2Q6YN16 418 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 LINGO2Q7L985 606 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 MRPL21Q7Z2W9 205 aaKnown RBP4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC46A3Q7Z3Q1 461 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 NRMQ8IXM6 262 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 C17orf78Q8N4C9 275 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 FAM47BQ8NA70 645 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 CHDHQ8NE62 594 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 OR5B17Q8NGF7 314 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 OR5M3Q8NGP4 307 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 OR13C9Q8NGT0 318 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 OR10T2Q8NGX3 314 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 OR6F1Q8NGZ6 308 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 NSMAFQ92636 917 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 SLCO2A1Q92959 643 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 TMEM45BQ96B21 275 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 CPB2Q96IY4 423 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 ZBTB45Q96K62 511 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 TMEM56Q96MV1 263 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 OR5B2Q96R09 309 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 FIZ1Q96SL8 496 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 SEPT5Q99719 369 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 MESP1Q9BRJ9 268 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 WDR83Q9BRX9 315 aaKnown RBP4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 SPATA5L1Q9BVQ7 753 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF350Q9GZX5 532 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 NT5DC2Q9H857 520 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 GPR35Q9HC97 309 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF334Q9HCZ1 680 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 NANSQ9NR45 359 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 SMOXQ9NWM0 555 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 JKAMPQ9P055 326 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 PAK5Q9P286 719 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 ELF5Q9UKW6 265 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 PSG11Q9UQ72 335 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 CDYLQ9Y232 598 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 LIPGQ9Y5X9 500 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 ALG6Q9Y672 507 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 TMEM56-RWDD3S4R434 201 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 MYH8P13535 1937 aa4.47□□□□□ -1.69
CCDC88A-209ENST00000456975 TCRBV21S2A2A0A5A6 115 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 LNP1A1A4G5 178 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 TBC1D3FA6NER0 549 aaPredicted RBP4.46□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms