RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 ACBD7Q8N6N7 88 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 OR8S1Q8NH09 359 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 SUN3Q8TAQ9 357 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 PNO1Q9NRX1 252 aaKnown RBP11.16□□□□□ -0.62
USP1-201ENST00000339950 TBC1D29Q9UFV1 150 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 ZNF346Q9UL40 294 aaKnown RBP11.16□□□□□ -0.62
USP1-201ENST00000339950 SZT2Q5T011 3432 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 CENPVL1A0A0U1RR11 272 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 LRIT2A6NDA9 550 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 LALBAP00709 142 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 NDUFV2P19404 249 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 EIF1AXP47813 144 aaKnown RBP11.16□□□□□ -0.62
USP1-201ENST00000339950 DMRTC1Q5HYR2 192 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 LYPD4Q6UWN0 246 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 TMEM99Q8N816 258 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 TXNDC15Q96J42 360 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 GABARAPL3Q9BY60 117 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 TPSD1Q9BZJ3 242 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 OR8D2Q9GZM6 311 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 OR52A5Q9H2C5 316 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 HINT3Q9NQE9 182 aaKnown RBP11.16□□□□□ -0.62
USP1-201ENST00000339950 COLEC10Q9Y6Z7 277 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 EP300Q09472 2414 aaPredicted RBP11.16□□□□□ -0.62
USP1-201ENST00000339950 DNAJC13O75165 2243 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 A0A0A6YYC8 382 aaPredicted RBP11.16□□□□□ -0.62
USP1-201ENST00000339950 A8MVJ9 347 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 I3L1I5 382 aaPredicted RBP11.16□□□□□ -0.62
USP1-201ENST00000339950 GABRPO00591 440 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 VEGFDO43915 354 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 SCG5P05408 212 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 EVI2BP34910 448 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 EPHA5P54756 1037 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 ILF3Q12906 894 aaKnown RBP eCLIP11.16□□□□□ -0.62
USP1-201ENST00000339950 DOC2BQ14184 412 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 FAAP20Q6NZ36 180 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 RTL4Q6ZR62 310 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 NOXA1Q86UR1 476 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 COMMD2Q86X83 199 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 TP53I13Q8NBR0 393 aaPredicted RBP11.16□□□□□ -0.62
USP1-201ENST00000339950 C4orf36Q96KX1 117 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 DCLRE1CQ96SD1 692 aaKnown RBP11.16□□□□□ -0.62
USP1-201ENST00000339950 PITX2Q99697 317 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 PDCD1LG2Q9BQ51 273 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 RETREG1Q9H6L5 497 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 RNF121Q9H920 327 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 ANKHQ9HCJ1 492 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 TBX21Q9UL17 535 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 NAALAD2Q9Y3Q0 740 aa11.16□□□□□ -0.62
USP1-201ENST00000339950 ARHGEF17Q96PE2 2063 aaPredicted RBP11.16□□□□□ -0.62
USP1-201ENST00000339950 ZSWIM8A7E2V4 1837 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 ACOD1A6NK06 481 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 PRODHO43272 600 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 LYRM1O43325 122 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 SRPRAP08240 638 aaKnown RBP11.15□□□□□ -0.62
USP1-201ENST00000339950 BMP8BP34820 402 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 SLC1A3P43003 542 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 FNTBP49356 437 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 ILKQ13418 452 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 LCTLQ6UWM7 567 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 BMP8AQ7Z5Y6 402 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 OR8D4Q8NGM9 314 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 WFIKKN2Q8TEU8 576 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 SETD7Q8WTS6 366 aaKnown RBP11.15□□□□□ -0.62
USP1-201ENST00000339950 RIT1Q92963 219 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 CTRCQ99895 268 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 KATNB1Q9BVA0 655 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 CHST8Q9H2A9 424 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 MTIF3Q9H2K0 278 aaKnown RBP11.15□□□□□ -0.62
USP1-201ENST00000339950 KRCC1Q9NPI7 259 aaPredicted RBP11.15□□□□□ -0.62
USP1-201ENST00000339950 CHST2Q9Y4C5 530 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 GPR179Q6PRD1 2367 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 SCN5AQ14524 2016 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 FOXE1O00358 373 aaPredicted RBP11.15□□□□□ -0.62
USP1-201ENST00000339950 UBXN7O94888 489 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 OLFM2O95897 454 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 MT-ND4P03905 459 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 ACVR2AP27037 513 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 CCR6P51684 374 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 CRMP1Q14194 572 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 EIF4HQ15056 248 aaKnown RBP11.15□□□□□ -0.62
USP1-201ENST00000339950 ZNHIT3Q15649 155 aaPredicted RBP11.15□□□□□ -0.62
USP1-201ENST00000339950 DUSP5Q16690 384 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 PUS10Q3MIT2 529 aaKnown RBP11.15□□□□□ -0.62
USP1-201ENST00000339950 MRPL2Q5T653 305 aaKnown RBP11.15□□□□□ -0.62
USP1-201ENST00000339950 ZNF438Q7Z4V0 828 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 ASPGQ86U10 573 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 TOMM5Q8N4H5 51 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 PROKR2Q8NFJ6 384 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 TNFRSF13CQ96RJ3 184 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 SGPP1Q9BX95 441 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 APOBEC3BQ9UH17 382 aaKnown RBP11.15□□□□□ -0.62
USP1-201ENST00000339950 STOML2Q9UJZ1 356 aa11.15□□□□□ -0.62
USP1-201ENST00000339950 SEMA7AO75326 666 aa11.15□□□□□ -0.63
USP1-201ENST00000339950 EML2O95834 649 aa11.15□□□□□ -0.63
USP1-201ENST00000339950 LIPCP11150 499 aa11.15□□□□□ -0.63
USP1-201ENST00000339950 PCSK2P16519 638 aa11.15□□□□□ -0.63
USP1-201ENST00000339950 UGT2B10P36537 528 aa11.15□□□□□ -0.63
USP1-201ENST00000339950 ATXN7L3Q14CW9 347 aaPredicted RBP11.15□□□□□ -0.63
USP1-201ENST00000339950 GFOD2Q3B7J2 385 aa11.15□□□□□ -0.63
USP1-201ENST00000339950 USP53Q70EK8 1073 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms