RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 ZNF829Q3KNS6 432 aaPredicted RBP13.4□□□□□ -0.26
VRK3-217ENST00000599538 EIPR1Q53HC9 387 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 SNAP47Q5SQN1 464 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 SLC27A4Q6P1M0 643 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 MBOAT2Q6ZWT7 520 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 SLC35F3Q8IY50 421 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 CAMKK1Q8N5S9 505 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 TEX47Q8TBZ9 253 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 RNF217Q8TC41 542 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 DNASE2BQ8WZ79 361 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 NR4A3Q92570 626 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 Q96MT0 163 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 CACYBPQ9HB71 228 aaKnown RBP13.4□□□□□ -0.26
VRK3-217ENST00000599538 ATP13A2Q9NQ11 1180 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 ERVK-19Q9WJR5 959 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 FRYLO94915 3013 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 hCG_2014768A0A024R1R8 64 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 LOC100506127A0A0U1RQW1 187 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 H3BMH7 237 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 BCAT2O15382 392 aaPredicted RBP13.4□□□□□ -0.26
VRK3-217ENST00000599538 FPR3P25089 353 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 IFNA8P32881 189 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 IDUAP35475 653 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 IFNGR2P38484 337 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 GPR3P46089 330 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 OR1D4P47884 311 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 CXCL12P48061 93 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 GAS1P54826 345 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 ZP2Q05996 745 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 SSX1Q16384 188 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 TSTQ16762 297 aaKnown RBP13.4□□□□□ -0.26
VRK3-217ENST00000599538 MRGPREQ86SM8 312 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 ZNF595Q8IYB9 648 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 SLC34A3Q8N130 599 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 Q8N9G6 341 aaPredicted RBP13.4□□□□□ -0.26
VRK3-217ENST00000599538 RCBTB1Q8NDN9 531 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 CRELD1Q96HD1 420 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 SH3YL1Q96HL8 342 aaPredicted RBP13.4□□□□□ -0.26
VRK3-217ENST00000599538 LMF2Q9BU23 707 aaKnown RBP13.4□□□□□ -0.26
VRK3-217ENST00000599538 CENPOQ9BU64 300 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 SLIRPQ9GZT3 109 aaKnown RBP13.4□□□□□ -0.26
VRK3-217ENST00000599538 ENKD1Q9H0I2 346 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 LSM2Q9Y333 95 aaKnown RBP13.4□□□□□ -0.26
VRK3-217ENST00000599538 RPL36Q9Y3U8 105 aaKnown RBP13.4□□□□□ -0.26
VRK3-217ENST00000599538 DMDP11532 3685 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 IGHV1OR21-1A0A087WYE8 117 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 TRAPPC13A5PLN9 417 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 KPNA4O00629 521 aaPredicted RBP13.39□□□□□ -0.27
VRK3-217ENST00000599538 COQ9O75208 318 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 CSO75390 466 aaKnown RBP13.39□□□□□ -0.27
VRK3-217ENST00000599538 SLC2A10O95528 541 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 MAKP20794 623 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 CLK1P49759 484 aaKnown RBP13.39□□□□□ -0.27
VRK3-217ENST00000599538 LIMK1P53667 647 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 FXYD6P3P58550 94 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 RPS3AP61247 264 aaKnown RBP13.39□□□□□ -0.27
VRK3-217ENST00000599538 ZNF620Q6ZNG0 422 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 TTLL10Q6ZVT0 673 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 ZNF367Q7RTV3 350 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 ARHGAP22Q7Z5H3 698 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 RANBP3LQ86VV4 465 aaPredicted RBP13.39□□□□□ -0.27
VRK3-217ENST00000599538 ATCAYQ86WG3 371 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 OR6C4Q8NGE1 309 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 OR52I1Q8NGK6 324 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 C16orf52Q8NHV5 167 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 C9orf43Q8TAL5 461 aaPredicted RBP13.39□□□□□ -0.27
VRK3-217ENST00000599538 ZHX1-C8orf76Q96EF9 292 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 TMEM80Q96HE8 168 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 PTCHD1Q96NR3 888 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 GUCD1Q96NT3 240 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 DGAT2Q96PD7 388 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 OPALINQ96PE5 141 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 LMF1Q96S06 567 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 CHCHD6Q9BRQ6 235 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 DPH1Q9BZG8 443 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 DCSTAMPQ9H295 470 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 IL20Q9NYY1 176 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 DHCR7Q9UBM7 475 aaKnown RBP13.39□□□□□ -0.27
VRK3-217ENST00000599538 ZNF223Q9UK11 482 aaPredicted RBP13.39□□□□□ -0.27
VRK3-217ENST00000599538 CARD8Q9Y2G2 431 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 CACNA1EQ15878 2313 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 A8MU76 341 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 ARHGAP33O14559 1287 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 AK1P00568 194 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 HBQ1P09105 142 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 IFI6P09912 130 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 ZGLP1P0C6A0 271 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 CT45A8P0DMV1 189 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 CT45A9P0DMV2 189 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 CSF2RBP32927 897 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 SOX3P41225 446 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 EFNA3P52797 238 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 C21orf59P57076 290 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 NCF4Q15080 339 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 CT45A2Q5DJT8 189 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 SHFQ7M4L6 423 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 ZNF321PQ8N8H1 164 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 TMEM163Q8TC26 289 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 AHCYL2Q96HN2 611 aaKnown RBP13.39□□□□□ -0.27
VRK3-217ENST00000599538 TBC1D23Q9NUY8 699 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms