RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 SLC9B1Q4ZJI4 515 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 PDCD4Q53EL6 469 aaKnown RBP12.16□□□□□ -0.46
CLK3-213ENST00000563842 DCST2Q5T1A1 773 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 HIST2H2BCQ6DN03 193 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 RTL6Q6ICC9 239 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 MTERF4Q7Z6M4 381 aaKnown RBP12.16□□□□□ -0.46
CLK3-213ENST00000563842 CLECL1Q8IZS7 167 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 RPRMLQ8N4K4 120 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 OR4C3Q8NH37 302 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 ZPLD1Q8TCW7 415 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 WDYHV1Q96HA8 205 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 OR7D2Q96RA2 312 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 PIGQQ9BRB3 760 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 CALHM2Q9HA72 323 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 KCNJ16Q9NPI9 418 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 FLRT3Q9NZU0 649 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 ZIM2Q9NZV7 527 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 MED11Q9P086 117 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 CD8B2A6NJW9 211 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 POLR3GO15318 223 aaPredicted RBP12.15□□□□□ -0.46
CLK3-213ENST00000563842 ZIC3O60481 467 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 DIAPH2O60879 1101 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 IL2RAP01589 272 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 PGRP06401 933 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 PEPDP12955 493 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 COX6B1P14854 86 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 TIMP3P35625 211 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 CHI3L1P36222 383 aaPredicted RBP12.15□□□□□ -0.46
CLK3-213ENST00000563842 ANXA11P50995 505 aaKnown RBP12.15□□□□□ -0.46
CLK3-213ENST00000563842 NME5P56597 212 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 EEFSECP57772 596 aaKnown RBP12.15□□□□□ -0.46
CLK3-213ENST00000563842 TXNL4AP83876 142 aaKnown RBP12.15□□□□□ -0.46
CLK3-213ENST00000563842 BCL2A1Q16548 175 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 ACSF3Q4G176 576 aaPredicted RBP12.15□□□□□ -0.46
CLK3-213ENST00000563842 CCNJQ5T5M9 372 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 ATAD3BQ5T9A4 648 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 NSUN5P2Q63ZY6 315 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 EPGNQ6UW88 154 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 CHMP1BQ7LBR1 199 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 ANKRD46Q86W74 232 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 MIPOL1Q8TD10 442 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 C1GALT1C1Q96EU7 318 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 OTUB1Q96FW1 271 aaPredicted RBP12.15□□□□□ -0.46
CLK3-213ENST00000563842 CCDC115Q96NT0 180 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 OR52E6Q96RD3 313 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 PANX1Q96RD7 426 aa12.15□□□□□ -0.46
CLK3-213ENST00000563842 RPH3AQ9Y2J0 694 aaPredicted RBP12.15□□□□□ -0.46
CLK3-213ENST00000563842 A0A087WZY1 265 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 H0Y3Z8 333 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 ZNF195O14628 629 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 ATP12AP54707 1039 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 STX1BP61266 288 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 PHC1P78364 1004 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 IRX1P78414 480 aaPredicted RBP12.14□□□□□ -0.47
CLK3-213ENST00000563842 SLC25A35Q3KQZ1 300 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 FLYWCH1Q4VC44 716 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 RAET1LQ5VY80 246 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 ZNF787Q6DD87 383 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 APOOLQ6UXV4 268 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 C16orf62Q7Z3J2 963 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 GALNT10Q86SR1 603 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 CCDC71Q8IV32 467 aaPredicted RBP12.14□□□□□ -0.47
CLK3-213ENST00000563842 CHDHQ8NE62 594 aaPredicted RBP12.14□□□□□ -0.47
CLK3-213ENST00000563842 NEURL3Q96EH8 262 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 LRRC46Q96FV0 321 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 TEX37Q96LM6 180 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 MAGEB18Q96M61 343 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 TRIB1Q96RU8 372 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 RTN4RQ9BZR6 473 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 RMND5AQ9H871 391 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 SDR39U1Q9NRG7 319 aaPredicted RBP12.14□□□□□ -0.47
CLK3-213ENST00000563842 CRYBG3Q68DQ2 2970 aa12.14□□□□□ -0.47
CLK3-213ENST00000563842 KIAA1549Q9HCM3 1950 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 A0A0G2JNJ9 132 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 GTPBP1O00178 669 aaKnown RBP12.13□□□□□ -0.47
CLK3-213ENST00000563842 DVL2O14641 736 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 STX11O75558 287 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 POU3F2P20265 443 aaPredicted RBP12.13□□□□□ -0.47
CLK3-213ENST00000563842 GRNP28799 593 aaKnown RBP12.13□□□□□ -0.47
CLK3-213ENST00000563842 IL12AP29459 219 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 CEACAM8P31997 349 aaPredicted RBP12.13□□□□□ -0.47
CLK3-213ENST00000563842 KHKP50053 298 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 LHX2P50458 406 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 ZNF41P51814 821 aaPredicted RBP12.13□□□□□ -0.47
CLK3-213ENST00000563842 DGKQP52824 942 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 SRYQ05066 204 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 CDSNQ15517 529 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 ARHGAP11BQ3KRB8 267 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 DCST1Q5T197 706 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 SAXO2Q658L1 398 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 ZNF621Q6ZSS3 439 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 MSANTD1Q6ZTZ1 278 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 MAVSQ7Z434 540 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 ZAR1Q86SH2 424 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 MIER2Q8N344 545 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 MEIOBQ8N635 442 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 OR5D16Q8NGK9 328 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 B4GALNT2Q8NHY0 566 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 PHOSPHO1Q8TCT1 267 aa12.13□□□□□ -0.47
CLK3-213ENST00000563842 CKAP2Q8WWK9 683 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms