RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 CLIP4Q8N3C7 705 aa9.5□□□□□ -0.89
USP3-219ENST00000561326 LINC00471Q8N535 108 aa9.5□□□□□ -0.89
USP3-219ENST00000561326 ZNF441Q8N8Z8 693 aa9.5□□□□□ -0.89
USP3-219ENST00000561326 OR6T1Q8NGN1 323 aa9.5□□□□□ -0.89
USP3-219ENST00000561326 SLC22A8Q8TCC7 542 aa9.5□□□□□ -0.89
USP3-219ENST00000561326 ELP5Q8TE02 316 aa9.5□□□□□ -0.89
USP3-219ENST00000561326 PHF10Q8WUB8 498 aaKnown RBP9.5□□□□□ -0.89
USP3-219ENST00000561326 NKD1Q969G9 470 aa9.5□□□□□ -0.89
USP3-219ENST00000561326 EFHD2Q96C19 240 aaPredicted RBP9.5□□□□□ -0.89
USP3-219ENST00000561326 OMA1Q96E52 524 aa9.5□□□□□ -0.89
USP3-219ENST00000561326 ADOQ96SZ5 270 aa9.5□□□□□ -0.89
USP3-219ENST00000561326 RBM4BQ9BQ04 359 aaKnown RBP9.5□□□□□ -0.89
USP3-219ENST00000561326 ZNF559Q9BR84 538 aa9.5□□□□□ -0.89
USP3-219ENST00000561326 RBM4Q9BWF3 364 aaKnown RBP9.5□□□□□ -0.89
USP3-219ENST00000561326 POLR2J2Q9GZM3 115 aaKnown RBP9.5□□□□□ -0.89
USP3-219ENST00000561326 POLR2J3Q9H1A7 115 aaKnown RBP9.5□□□□□ -0.89
USP3-219ENST00000561326 Q9H521 79 aa9.5□□□□□ -0.89
USP3-219ENST00000561326 HHATLQ9HCP6 504 aa9.5□□□□□ -0.89
USP3-219ENST00000561326 MYOTQ9UBF9 498 aa9.5□□□□□ -0.89
USP3-219ENST00000561326 TESMINQ9Y4I5 508 aa9.5□□□□□ -0.89
USP3-219ENST00000561326 AK5Q9Y6K8 562 aa9.5□□□□□ -0.89
USP3-219ENST00000561326 U3KQV3 271 aa9.5□□□□□ -0.89
USP3-219ENST00000561326 DMXL1Q9Y485 3027 aa9.5□□□□□ -0.89
USP3-219ENST00000561326 MPDZO75970 2070 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 NPIPA5A0A0B4J1W7 369 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 CDC14CA4D256 554 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 PRAMEF25A6NGN4 478 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 SERINC4A6NH21 518 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 OR6C70A6NIJ9 312 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 NPIPA7E9PJI5 369 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 M0R3H8 397 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 PDLIM1O00151 329 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 TSPAN2O60636 221 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 FMO6PO60774 539 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 DXOO77932 396 aaKnown RBP9.49□□□□□ -0.89
USP3-219ENST00000561326 HPRP00739 348 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 CSTAP01040 98 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 H1F0P07305 194 aaKnown RBP9.49□□□□□ -0.89
USP3-219ENST00000561326 NGFRP08138 427 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 NPIPA8P0DM63 369 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 ALDH3A2P51648 485 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 RPS18P62269 152 aaKnown RBP9.49□□□□□ -0.89
USP3-219ENST00000561326 ST3GAL3Q11203 375 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 EPS8Q12929 822 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 DAG1Q14118 895 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 FGFBP1Q14512 234 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 RTP5Q14D33 572 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 TAF11Q15544 211 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 MAPK14Q16539 360 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 RFX4Q33E94 735 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 MRPL2Q5T653 305 aaKnown RBP9.49□□□□□ -0.89
USP3-219ENST00000561326 FAM69BQ5VUD6 431 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 RRM2BQ7LG56 351 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 NUP54Q7Z3B4 507 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 PPP1R32Q7Z5V6 425 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 TSEN54Q7Z6J9 526 aaKnown RBP9.49□□□□□ -0.89
USP3-219ENST00000561326 ZAR1Q86SH2 424 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 ZSCAN1Q8NBB4 408 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 TOR1AIP2Q8NFQ8 470 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 OR4C3Q8NH37 302 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 MAGEE2Q8TD90 523 aaPredicted RBP9.49□□□□□ -0.89
USP3-219ENST00000561326 GIPC3Q8TF64 312 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 THAP3Q8WTV1 239 aaPredicted RBP9.49□□□□□ -0.89
USP3-219ENST00000561326 TTC9Q92623 222 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 TMCO6Q96DC7 493 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 MCHR1Q99705 422 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 SLC29A1Q99808 456 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 TBL1XR1Q9BZK7 514 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 GPN2Q9H9Y4 310 aaPredicted RBP9.49□□□□□ -0.89
USP3-219ENST00000561326 NMNAT1Q9HAN9 279 aaPredicted RBP9.49□□□□□ -0.89
USP3-219ENST00000561326 TMEM27Q9HBJ8 222 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 ZBTB20Q9HC78 741 aaPredicted RBP9.49□□□□□ -0.89
USP3-219ENST00000561326 ZNF160Q9HCG1 818 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 ACER3Q9NUN7 267 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 RLIMQ9NVW2 624 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 PDP1Q9P0J1 537 aaPredicted RBP9.49□□□□□ -0.89
USP3-219ENST00000561326 KCNE5Q9UJ90 142 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 ZNF223Q9UK11 482 aaPredicted RBP9.49□□□□□ -0.89
USP3-219ENST00000561326 PRDM4Q9UKN5 801 aa9.49□□□□□ -0.89
USP3-219ENST00000561326 YARS2Q9Y2Z4 477 aaKnown RBP9.49□□□□□ -0.89
USP3-219ENST00000561326 CNTRLQ7Z7A1 2325 aa9.48□□□□□ -0.89
USP3-219ENST00000561326 LOC101059948A0A1B0GTJ6 334 aa9.48□□□□□ -0.89
USP3-219ENST00000561326 A0A1W2PQD3 144 aa9.48□□□□□ -0.89
USP3-219ENST00000561326 A0A1W2PRQ8 180 aa9.48□□□□□ -0.89
USP3-219ENST00000561326 WWP2O00308 870 aa9.48□□□□□ -0.89
USP3-219ENST00000561326 SOCS2O14508 198 aa9.48□□□□□ -0.89
USP3-219ENST00000561326 EI24O14681 340 aa9.48□□□□□ -0.89
USP3-219ENST00000561326 PRKNO60260 465 aaPredicted RBP9.48□□□□□ -0.89
USP3-219ENST00000561326 PPM1BO75688 479 aa9.48□□□□□ -0.89
USP3-219ENST00000561326 CYP7B1O75881 506 aa9.48□□□□□ -0.89
USP3-219ENST00000561326 OR5F1O95221 314 aa9.48□□□□□ -0.89
USP3-219ENST00000561326 OXSR1O95747 527 aaPredicted RBP9.48□□□□□ -0.89
USP3-219ENST00000561326 THRBP10828 461 aa9.48□□□□□ -0.89
USP3-219ENST00000561326 CYP4B1P13584 511 aa9.48□□□□□ -0.89
USP3-219ENST00000561326 ANXA8P13928 327 aa9.48□□□□□ -0.89
USP3-219ENST00000561326 UQCRBP14927 111 aa9.48□□□□□ -0.89
USP3-219ENST00000561326 CDH2P19022 906 aaPredicted RBP9.48□□□□□ -0.89
USP3-219ENST00000561326 RAD23AP54725 363 aa9.48□□□□□ -0.89
USP3-219ENST00000561326 RPP38P78345 283 aaKnown RBP9.48□□□□□ -0.89
USP3-219ENST00000561326 DGCR6Q14129 220 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms