RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 EIPR1Q53HC9 387 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 DCST2Q5T1A1 773 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 OR5M10Q6IEU7 315 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 TNFAIP8L2Q6P589 184 aaPredicted RBP8.52□□□□□ -1.05
LDLR-211ENST00000560173 DNAJC14Q6Y2X3 702 aaPredicted RBP8.52□□□□□ -1.05
LDLR-211ENST00000560173 MARCH3Q86UD3 253 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 FUNDC1Q8IVP5 155 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 TRIML2Q8N7C3 387 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 FADS6Q8N9I5 356 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 CHDHQ8NE62 594 aaPredicted RBP8.52□□□□□ -1.05
LDLR-211ENST00000560173 FAM83FQ8NEG4 500 aaPredicted RBP8.52□□□□□ -1.05
LDLR-211ENST00000560173 OR2M3Q8NG83 312 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 OR4K17Q8NGC6 315 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 OR4C3Q8NH37 302 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 NEIL3Q8TAT5 605 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 VPS33AQ96AX1 596 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 SARAFQ96BY9 339 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 NSL1Q96IY1 281 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 PHF12Q96QT6 1004 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 SLC35A5Q9BS91 424 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 TBL1XR1Q9BZK7 514 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 OR51I1Q9H343 314 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 ZNF385DQ9H6B1 395 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 LDAHQ9H6V9 325 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 EXO5Q9H790 373 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 UBQLN4Q9NRR5 601 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 SLC6A13Q9NSD5 602 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 TMEM45AQ9NWC5 275 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 PPP4R1LQ9P1A2 415 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 TNFRSF10DQ9UBN6 386 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 PLEKHB1Q9UF11 243 aaPredicted RBP8.52□□□□□ -1.05
LDLR-211ENST00000560173 PCDHGB3Q9Y5G1 929 aa8.52□□□□□ -1.05
LDLR-211ENST00000560173 FREM3P0C091 2139 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 C15orf38-AP3S2A0A0A6YYH1 394 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 DUXAA6NLW8 204 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 E9PLN8 166 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 NPIPB9F8W1W9 429 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 NR5A2O00482 541 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 RFXANKO14593 260 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 ZG16O60844 167 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 ANGPTL1O95841 491 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 AK1P00568 194 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 ZCCHC18P0CG32 403 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 OR12D1P0DN82 309 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 ESRRAP11474 423 aaPredicted RBP8.51□□□□□ -1.05
LDLR-211ENST00000560173 ATP6V1C1P21283 382 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 TBXA2RP21731 343 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 PRDX6P30041 224 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 SRD5A2P31213 254 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 CLK3P49761 638 aaKnown RBP8.51□□□□□ -1.05
LDLR-211ENST00000560173 KHKP50053 298 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 CASP9P55211 416 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 CRYZQ08257 329 aaKnown RBP8.51□□□□□ -1.05
LDLR-211ENST00000560173 SF3A3Q12874 501 aaKnown RBP eCLIP8.51□□□□□ -1.05
LDLR-211ENST00000560173 TOMM20Q15388 145 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 NHSL2Q5HYW2 709 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 WIPI1Q5MNZ9 446 aaPredicted RBP8.51□□□□□ -1.05
LDLR-211ENST00000560173 HEPHL1Q6MZM0 1159 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 MTFR2Q6P444 385 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 BLOC1S3Q6QNY0 202 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 C3P1Q6ZMU1 363 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 ZNF621Q6ZSS3 439 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 YRDCQ86U90 279 aaKnown RBP8.51□□□□□ -1.05
LDLR-211ENST00000560173 RNF130Q86XS8 419 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 OR5M9Q8NGP3 310 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 GTF2H4Q92759 462 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 CMTM5Q96DZ9 223 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 DTNBP1Q96EV8 351 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 CCDC120Q96HB5 630 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 ITCHQ96J02 903 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 DMRTA2Q96SC8 542 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 SDF2Q99470 211 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 VKORC1Q9BQB6 163 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 ZNF350Q9GZX5 532 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 LRMDAQ9H2I8 198 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 TP63Q9H3D4 680 aaPredicted RBP8.51□□□□□ -1.05
LDLR-211ENST00000560173 MMADHCQ9H3L0 296 aaPredicted RBP8.51□□□□□ -1.05
LDLR-211ENST00000560173 DSN1Q9H410 356 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 RMND5AQ9H871 391 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 SLC52A3Q9NQ40 469 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 SDHAF3Q9NRP4 125 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 PNPLA3Q9NST1 481 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 TAS2R10Q9NYW0 307 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 SUCOQ9UBS9 1254 aaKnown RBP8.51□□□□□ -1.05
LDLR-211ENST00000560173 MEMO1Q9Y316 297 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 SLC6A5Q9Y345 797 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 CAPN7Q9Y6W3 813 aa8.51□□□□□ -1.05
LDLR-211ENST00000560173 NPIPA5A0A0B4J1W7 369 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 A0A1W2PQD3 144 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 PRAMEF27A3QJZ7 478 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 NPIPA7E9PJI5 369 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 HMGN4O00479 90 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 SCDO00767 359 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 NDUFB5O43674 189 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 ZIC3O60481 467 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 KRT75O95678 551 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 AGR2O95994 175 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 GUSBP08236 651 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 NPIPA8P0DM63 369 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 CD1EP15812 388 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms