RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 SMYD1Q8NB12 490 aa8.57□□□□□ -1.04
DDX55-208ENST00000541259 BHLHE22Q8NFJ8 381 aaPredicted RBP8.57□□□□□ -1.04
DDX55-208ENST00000541259 TNIP2Q8NFZ5 429 aa8.57□□□□□ -1.04
DDX55-208ENST00000541259 OR10G3Q8NGC4 313 aa8.57□□□□□ -1.04
DDX55-208ENST00000541259 FAM162AQ96A26 154 aa8.57□□□□□ -1.04
DDX55-208ENST00000541259 SPACA9Q96E40 222 aaPredicted RBP8.57□□□□□ -1.04
DDX55-208ENST00000541259 AGAP4Q96P64 663 aa8.57□□□□□ -1.04
DDX55-208ENST00000541259 RAB3IPQ96QF0 476 aaPredicted RBP8.57□□□□□ -1.04
DDX55-208ENST00000541259 RTN4RQ9BZR6 473 aa8.57□□□□□ -1.04
DDX55-208ENST00000541259 GORASP2Q9H8Y8 452 aa8.57□□□□□ -1.04
DDX55-208ENST00000541259 POLE3Q9NRF9 147 aa8.57□□□□□ -1.04
DDX55-208ENST00000541259 CALML5Q9NZT1 146 aa8.57□□□□□ -1.04
DDX55-208ENST00000541259 ACTR3BQ9P1U1 418 aa8.57□□□□□ -1.04
DDX55-208ENST00000541259 MAGEL2Q9UJ55 1249 aa8.57□□□□□ -1.04
DDX55-208ENST00000541259 MRTO4Q9UKD2 239 aaKnown RBP8.57□□□□□ -1.04
DDX55-208ENST00000541259 CHST2Q9Y4C5 530 aa8.57□□□□□ -1.04
DDX55-208ENST00000541259 DSPP15924 2871 aaKnown RBP8.56□□□□□ -1.04
DDX55-208ENST00000541259 CFAP73A6NFT4 308 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 AGAP5A6NIR3 686 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 ADAM10O14672 748 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 OIP5O43482 229 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 FADS1O60427 444 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 BCAS1O75363 584 aaPredicted RBP8.56□□□□□ -1.04
DDX55-208ENST00000541259 GMNNO75496 209 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 CIB2O75838 187 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 OXSR1O95747 527 aaPredicted RBP8.56□□□□□ -1.04
DDX55-208ENST00000541259 EPPINO95925 133 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 PABPC4LP0CB38 370 aaKnown RBP8.56□□□□□ -1.04
DDX55-208ENST00000541259 CCL3P10147 92 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 ETS2P15036 469 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 TNFRSF1BP20333 461 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 CD247P20963 164 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 TBXA2RP21731 343 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 RPS4Y1P22090 263 aaKnown RBP8.56□□□□□ -1.04
DDX55-208ENST00000541259 PSMD4P55036 377 aaKnown RBP8.56□□□□□ -1.04
DDX55-208ENST00000541259 UCNP55089 124 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 POLE2P56282 527 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 PSPHP78330 225 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 TUBA3CQ13748 450 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 CCNIQ14094 377 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 EFR3AQ14156 821 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 FLOT2Q14254 428 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 KPNB1Q14974 876 aaKnown RBP8.56□□□□□ -1.04
DDX55-208ENST00000541259 ZNF141Q15928 474 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 DUSP7Q16829 419 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 KLHL26Q53HC5 615 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 CYBRD1Q53TN4 286 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 ZNF311Q5JNZ3 666 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 C1orf146Q5VVC0 180 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 LCN8Q6JVE9 175 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 TUBA3EQ6PEY2 450 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 BORAQ6PGQ7 559 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 ENPP6Q6UWR7 440 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 ISLR2Q6UXK2 745 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 ZNF836Q6ZNA1 936 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 CBLL1Q75N03 491 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 NUP54Q7Z3B4 507 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 MDGA2Q7Z553 956 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 VTCN1Q7Z7D3 282 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 PATL1Q86TB9 770 aaKnown RBP8.56□□□□□ -1.04
DDX55-208ENST00000541259 MARCH3Q86UD3 253 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 ARMC8Q8IUR7 673 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 CLIP4Q8N3C7 705 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 ZNF614Q8N883 585 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 GATSQ8NAP1 163 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 GPR32P1Q8NGA4 272 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 OR52P1PQ8NH57 321 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 GRHL3Q8TE85 626 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 APOBEC4Q8WW27 367 aaKnown RBP8.56□□□□□ -1.04
DDX55-208ENST00000541259 EXTL1Q92935 676 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 ARSGQ96EG1 525 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 NSMCE2Q96MF7 247 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 SIGLEC12Q96PQ1 595 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 ZNF607Q96SK3 696 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 WFDC6Q9BQY6 131 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 SH2D2AQ9NP31 389 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 DCAF13Q9NV06 445 aaKnown RBP8.56□□□□□ -1.04
DDX55-208ENST00000541259 RLIMQ9NVW2 624 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 HPF1Q9NWY4 346 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 TEKT2Q9UIF3 430 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 ZNF443Q9Y2A4 671 aaPredicted RBP8.56□□□□□ -1.04
DDX55-208ENST00000541259 ZNF451Q9Y4E5 1061 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 CHCHD2Q9Y6H1 151 aaPredicted RBP8.56□□□□□ -1.04
DDX55-208ENST00000541259 V9GYQ6 96 aa8.56□□□□□ -1.04
DDX55-208ENST00000541259 ZZEF1O43149 2961 aa8.55□□□□□ -1.04
DDX55-208ENST00000541259 MED12Q93074 2177 aa8.55□□□□□ -1.04
DDX55-208ENST00000541259 TMEM8BA6NDV4 472 aa8.55□□□□□ -1.04
DDX55-208ENST00000541259 PRAMEF25A6NGN4 478 aa8.55□□□□□ -1.04
DDX55-208ENST00000541259 FIGNL2A6NMB9 653 aa8.55□□□□□ -1.04
DDX55-208ENST00000541259 G3V3Y1 287 aa8.55□□□□□ -1.04
DDX55-208ENST00000541259 K7EM74 188 aa8.55□□□□□ -1.04
DDX55-208ENST00000541259 CDK2AP1O14519 115 aa8.55□□□□□ -1.04
DDX55-208ENST00000541259 SCO2O43819 266 aa8.55□□□□□ -1.04
DDX55-208ENST00000541259 HS6ST1O60243 411 aa8.55□□□□□ -1.04
DDX55-208ENST00000541259 SERPINB7O75635 380 aa8.55□□□□□ -1.04
DDX55-208ENST00000541259 PDE9AO76083 593 aa8.55□□□□□ -1.04
DDX55-208ENST00000541259 PRKD3O94806 890 aa8.55□□□□□ -1.04
DDX55-208ENST00000541259 ZNF682O95780 498 aa8.55□□□□□ -1.04
DDX55-208ENST00000541259 DBIP07108 87 aaKnown RBP8.55□□□□□ -1.04
DDX55-208ENST00000541259 IL7RP16871 459 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms