RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 ZNF556Q9HAH1 456 aa10.01□□□□□ -0.81
CLIP1-210ENST00000538120 SRA1Q9HD15 236 aaKnown RBP10.01□□□□□ -0.81
CLIP1-210ENST00000538120 FANCFQ9NPI8 374 aa10.01□□□□□ -0.81
CLIP1-210ENST00000538120 MAN2C1Q9NTJ4 1040 aa10.01□□□□□ -0.81
CLIP1-210ENST00000538120 CCDC59Q9P031 241 aaKnown RBP10.01□□□□□ -0.81
CLIP1-210ENST00000538120 MRPS17Q9Y2R5 130 aaKnown RBP10.01□□□□□ -0.81
CLIP1-210ENST00000538120 GPR55Q9Y2T6 319 aaPredicted RBP10.01□□□□□ -0.81
CLIP1-210ENST00000538120 A3GALT2U3KPV4 340 aa10.01□□□□□ -0.81
CLIP1-210ENST00000538120 SYNDIG1LA6NDD5 238 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 SLC9B1P1A6NJY1 282 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 ZAR1LA6NP61 321 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 LOC110117498-PIK3R3F6TDL0 507 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 SGK494L7N484 410 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 TLR4O00206 839 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 RGS13O14921 159 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 NDUFB5O43674 189 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 IDH3BO43837 385 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 LDB3O75112 727 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 UBXN7O94888 489 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 CHMP24386 653 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 PDX1P52945 283 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 SHC2P98077 582 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 MGAT2Q10469 447 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 PTGES3Q15185 160 aaKnown RBP10□□□□□ -0.81
CLIP1-210ENST00000538120 SPANXN2Q5MJ10 180 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 DCST1Q5T197 706 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 MLIPQ5VWP3 458 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 CDC73Q6P1J9 531 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 PGBD2Q6P3X8 592 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 VRK2Q86Y07 508 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 TAGAPQ8N103 731 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 LINC00469Q8N7U9 141 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 CADM4Q8NFZ8 388 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 C1orf216Q8TAB5 229 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 LMX1AQ8TE12 382 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 MS4A4EQ96PG1 132 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 MOV10Q9HCE1 1003 aaKnown RBP10□□□□□ -0.81
CLIP1-210ENST00000538120 MUTYHQ9UIF7 546 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 LIPT1Q9Y234 373 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 PEX16Q9Y5Y5 336 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 FAAHO00519 579 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 TPST2O60704 377 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 GPX5O75715 221 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 KRT8P05787 483 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 IGFBP1P08833 259 aaPredicted RBP10□□□□□ -0.81
CLIP1-210ENST00000538120 ACP2P11117 423 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 AZGP1P25311 298 aaKnown RBP10□□□□□ -0.81
CLIP1-210ENST00000538120 FASLGP48023 281 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 CRISP1P54107 249 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 SQSTM1Q13501 440 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 ELOCQ15369 112 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 SSX1Q16384 188 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 NDUFA5Q16718 116 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 ARMC6Q6NXE6 501 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 PODNL1Q6PEZ8 512 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 IQCHQ86VS3 1027 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 ATCAYQ86WG3 371 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 C17orf82Q86X59 251 aaPredicted RBP10□□□□□ -0.81
CLIP1-210ENST00000538120 MCATQ8IVS2 390 aaKnown RBP10□□□□□ -0.81
CLIP1-210ENST00000538120 DEPDC4Q8N2C3 294 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 ESX1Q8N693 406 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 ZNF655Q8N720 491 aaPredicted RBP10□□□□□ -0.81
CLIP1-210ENST00000538120 C19orf47Q8N9M1 422 aaKnown RBP10□□□□□ -0.81
CLIP1-210ENST00000538120 AVL9Q8NBF6 648 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 LILRB4Q8NHJ6 448 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 CDS1Q92903 461 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 ANKRD9Q96BM1 317 aaPredicted RBP10□□□□□ -0.81
CLIP1-210ENST00000538120 ARHGDIGQ99819 225 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 DDX28Q9NUL7 540 aaKnown RBP10□□□□□ -0.81
CLIP1-210ENST00000538120 PTGFRNQ9P2B2 879 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 WNT16Q9UBV4 365 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 ZNF221Q9UK13 617 aa10□□□□□ -0.81
CLIP1-210ENST00000538120 CASC3O15234 703 aaKnown RBP9.99□□□□□ -0.81
CLIP1-210ENST00000538120 GPR75O95800 540 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 ADAP00813 363 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 TP53P04637 393 aaPredicted RBP9.99□□□□□ -0.81
CLIP1-210ENST00000538120 ATP1B1P05026 303 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 TNFSF8P32971 234 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 SLC15A1P46059 708 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 DUSP5Q16690 384 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 C21orf62-AS1Q17RA5 79 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 PRTGQ2VWP7 1150 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 FAM214AQ32MH5 1076 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 ZNF311Q5JNZ3 666 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 FRRS1Q6ZNA5 592 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 UBQLNLQ8IYU4 475 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 OR9A4Q8NGU2 314 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 ADAMTS15Q8TE58 950 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 MGLLQ99685 303 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 UCK2Q9BZX2 261 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 UCK1Q9HA47 277 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 PLSCR3Q9NRY6 295 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 MKLN1Q9UL63 735 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 C19orf53Q9UNZ5 99 aaPredicted RBP9.99□□□□□ -0.81
CLIP1-210ENST00000538120 MGAT4BQ9UQ53 548 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 SLC9A8Q9Y2E8 581 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 MN1Q10571 1320 aaPredicted RBP9.99□□□□□ -0.81
CLIP1-210ENST00000538120 SYT5O00445 386 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 RGS5O15539 181 aa9.99□□□□□ -0.81
CLIP1-210ENST00000538120 RDH16O75452 317 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms