RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	OR5M3	Q8NGP4	307 aa		8.01	□□□□□ -1.13
USP4-213	ENST00000488520	OR10Q1	Q8NGQ4	319 aa		8.01	□□□□□ -1.13
USP4-213	ENST00000488520	OR9A2	Q8NGT5	310 aa		8.01	□□□□□ -1.13
USP4-213	ENST00000488520	OR8K3	Q8NH51	312 aa		8.01	□□□□□ -1.13
USP4-213	ENST00000488520	ZNF675	Q8TD23	568 aa		8.01	□□□□□ -1.13
USP4-213	ENST00000488520	DOK4	Q8TEW6	326 aa		8.01	□□□□□ -1.13
USP4-213	ENST00000488520	TSPEAR	Q8WU66	669 aa		8.01	□□□□□ -1.13
USP4-213	ENST00000488520	CMTM5	Q96DZ9	223 aa		8.01	□□□□□ -1.13
USP4-213	ENST00000488520	ELP4	Q96EB1	424 aa		8.01	□□□□□ -1.13
USP4-213	ENST00000488520	TP63	Q9H3D4	680 aa	Predicted RBP	8.01	□□□□□ -1.13
USP4-213	ENST00000488520	SAR1A	Q9NR31	198 aa		8.01	□□□□□ -1.13
USP4-213	ENST00000488520	GID8	Q9NWU2	228 aa		8.01	□□□□□ -1.13
USP4-213	ENST00000488520	KCNN3	Q9UGI6	736 aa		8.01	□□□□□ -1.13
USP4-213	ENST00000488520	BTNL2	Q9UIR0	455 aa		8.01	□□□□□ -1.13
USP4-213	ENST00000488520	LEF1	Q9UJU2	399 aa	Predicted RBP	8.01	□□□□□ -1.13
USP4-213	ENST00000488520	MRTO4	Q9UKD2	239 aa	Known RBP	8.01	□□□□□ -1.13
USP4-213	ENST00000488520	EXO1	Q9UQ84	846 aa	Known RBP	8.01	□□□□□ -1.13
USP4-213	ENST00000488520	KLF13	Q9Y2Y9	288 aa	Predicted RBP	8.01	□□□□□ -1.13
USP4-213	ENST00000488520	CAPN7	Q9Y6W3	813 aa		8.01	□□□□□ -1.13
USP4-213	ENST00000488520	ARID1A	O14497	2285 aa		8.01	□□□□□ -1.13
USP4-213	ENST00000488520	MED12	Q93074	2177 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520		A0A1W2PP18	115 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	ANKRD33B	A6NCL7	494 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	TMEM247	A6NEH6	219 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	TTC36	A6NLP5	189 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	DUXA	A6NLW8	204 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	EVPLL	A8MZ36	301 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	NPIPA2	E9PIF3	369 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	NPIPA3	F8WFD2	350 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	ANKRD28	O15084	1053 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	PLOD3	O60568	738 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	IL12A	P29459	219 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	FRK	P42685	505 aa	Predicted RBP	8	□□□□□ -1.13
USP4-213	ENST00000488520	HLCS	P50747	726 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	RNF4	P78317	190 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	MRPS35	P82673	323 aa	Known RBP	8	□□□□□ -1.13
USP4-213	ENST00000488520	FUT7	Q11130	342 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	KLF10	Q13118	480 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	EXOSC7	Q15024	291 aa	Known RBP	8	□□□□□ -1.13
USP4-213	ENST00000488520	LTB4R	Q15722	352 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	MSMP	Q1L6U9	139 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	TIGD2	Q4W5G0	525 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	ZNF385B	Q569K4	471 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	ZNF628	Q5EBL2	1059 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	EMC4	Q5J8M3	183 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	ZCCHC12	Q6PEW1	402 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	DGAT2L6	Q6ZPD8	337 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520		Q71RC1	249 aa	Predicted RBP	8	□□□□□ -1.13
USP4-213	ENST00000488520	C6orf120	Q7Z4R8	191 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	MDGA2	Q7Z553	956 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	ANKRD46	Q86W74	232 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	ZZZ3	Q8IYH5	903 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	LGI4	Q8N135	537 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	CYP4Z2P	Q8N1L4	340 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	TMEM156	Q8N614	296 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	POGLUT1	Q8NBL1	392 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	NFAM1	Q8NET5	270 aa	Predicted RBP	8	□□□□□ -1.13
USP4-213	ENST00000488520	OR56A1	Q8NGH5	318 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	OR5M9	Q8NGP3	310 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	RP9	Q8TA86	221 aa	Known RBP	8	□□□□□ -1.13
USP4-213	ENST00000488520	SLC22A8	Q8TCC7	542 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	ADAMTS15	Q8TE58	950 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	ZNF721	Q8TF20	911 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	VPS33A	Q96AX1	596 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	TEX37	Q96LM6	180 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	GAL3ST4	Q96RP7	486 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	FOXC2	Q99958	501 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	POLDIP3	Q9BY77	421 aa	Known RBP	8	□□□□□ -1.13
USP4-213	ENST00000488520	RAD21L1	Q9H4I0	556 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	EFCAB1	Q9HAE3	211 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	ZCCHC3	Q9NUD5	404 aa	Known RBP	8	□□□□□ -1.13
USP4-213	ENST00000488520	MAT2B	Q9NZL9	334 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	C19orf53	Q9UNZ5	99 aa	Predicted RBP	8	□□□□□ -1.13
USP4-213	ENST00000488520	YARS2	Q9Y2Z4	477 aa	Known RBP	8	□□□□□ -1.13
USP4-213	ENST00000488520	OR10H1	Q9Y4A9	318 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	DSCAM	O60469	2012 aa		8	□□□□□ -1.13
USP4-213	ENST00000488520	NSD1	Q96L73	2696 aa	Predicted RBP	7.99	□□□□□ -1.13
USP4-213	ENST00000488520		A0A1W2PS29	197 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	FAM221A	A4D161	298 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	PINLYP	A6NC86	204 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	FAM166B	A8MTA8	275 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520		C9JVG2	144 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	WWP2	O00308	870 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	ERN1	O75460	977 aa	Known RBP	7.99	□□□□□ -1.13
USP4-213	ENST00000488520	WNT11	O96014	354 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	GSN	P06396	782 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	IFI6	P09912	130 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	ALOX5	P09917	674 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	CT62	P0C5K7	136 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	MATN1	P21941	496 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	PPIB	P23284	216 aa	Known RBP	7.99	□□□□□ -1.13
USP4-213	ENST00000488520	MC3R	P41968	323 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	PPIC	P45877	212 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	SSR4	P51571	173 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	MNAT1	P51948	309 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	PSMD4	P55036	377 aa	Known RBP	7.99	□□□□□ -1.13
USP4-213	ENST00000488520	DLX5	P56178	289 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	SLC37A1	P57057	533 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	HBA1	P69905	142 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	PSPH	P78330	225 aa		7.99	□□□□□ -1.13

Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms