RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 REM1O75628 298 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 PCSK2P16519 638 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 GATMP50440 423 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 CTSCP53634 463 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 PIP5KL1Q5T9C9 394 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 GLB1LQ6UWU2 654 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 OVCH2Q7RTZ1 564 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 CPOQ8IVL8 374 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 CPXM2Q8N436 756 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 BOLLQ8N9W6 283 aaKnown RBP12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 RELL2Q8NC24 303 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 C17orf47Q8NEP4 570 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 SLC5A11Q8WWX8 675 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 ATOH1Q92858 354 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 ZG16BQ96DA0 208 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 TMEM169Q96HH4 297 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 TIMP4Q99727 224 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 NTMQ9P121 344 aa12.58□□□□□ -0.4
CCDC88C-201ENST00000331194 A0A0G2JN53 185 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 PLSCR5A0PG75 271 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 CPSF4LA6NMK7 179 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 MAGEB4O15481 346 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 HOXB3P14651 431 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 MTNR1BP49286 362 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 DEFA5Q01523 94 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 HTR4Q13639 388 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 DEFB115Q30KQ5 88 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 ENTPD8Q5MY95 495 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 AADACL4Q5VUY2 407 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 PAQR7Q86WK9 346 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 TBC1D19Q8N5T2 526 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 ASZ1Q8WWH4 475 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 ORAI1Q96D31 301 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 ASB6Q9NWX5 421 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 IGLV3-16A0A075B6K0 115 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 NPC1O15118 1278 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 ARPC1BO15143 372 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 PTP4A3O75365 173 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 NR2F1P10589 423 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 NPPBP16860 134 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 FUT1P19526 365 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 TBPL1P62380 186 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 HLXQ14774 488 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 PLEKHS1Q5SXH7 462 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 TMPRSS9Q7Z410 1059 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 CBARPQ8N350 705 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 BVESQ8NE79 360 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 NXPE3Q969Y0 559 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 VOPP1Q96AW1 172 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 CXorf40BQ96DE9 158 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 NEURL3Q96EH8 262 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 WDR26Q9H7D7 661 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 HINT3Q9NQE9 182 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 RCE1Q9Y256 329 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 SPTBN5Q9NRC6 3674 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 TRAV20A0A0B4J274 112 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 MRPL3P09001 348 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 ANXA7P20073 488 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 NFYAP23511 347 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 F8A1P23610 371 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 UBE2MP61081 183 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 SP140Q13342 867 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 RETSATQ6NUM9 610 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 FIP1L1Q6UN15 594 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 TPRG1Q6ZUI0 275 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 SERPINA12Q8IW75 414 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 ZNF454Q8N9F8 522 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 OR52B4Q8NGK2 314 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 OR56B4Q8NH76 319 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 ZNF480Q8WV37 535 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 KAT2AQ92830 837 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 A4GALTQ9NPC4 353 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 MYNNQ9NPC7 610 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 CD93Q9NPY3 652 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 TEX10Q9NXF1 929 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 ZNF69Q9UC07 566 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 PFDN2Q9UHV9 154 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 ING1Q9UK53 422 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 GPR55Q9Y2T6 319 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 NPTNQ9Y639 398 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 RNF215Q9Y6U7 377 aa12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 ZNF106Q9H2Y7 1883 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-201ENST00000331194 MYOFQ9NZM1 2061 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 KRBOX1C9JBD0 128 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 MCRIP1C9JLW8 97 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 CHST10O43529 356 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 PEX14O75381 377 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 ATF1P18846 271 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 CENPAP49450 140 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 CNTN1Q12860 1018 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 SYTL3Q4VX76 610 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 HSD17B12Q53GQ0 312 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 FGD2Q7Z6J4 655 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 SERINC5Q86VE9 423 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 TMEM173Q86WV6 379 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 OR1F2PQ96R84 312 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 ZNF197O14709 1029 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 SLC16A5O15375 505 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 IGF2P01344 180 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 GDNFP39905 211 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms