RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 CYSLTR2Q9NS75 346 aa9.66□□□□□ -0.86
UPF3B-201ENST00000276201 TVP23BQ9NYZ1 205 aa9.66□□□□□ -0.86
UPF3B-201ENST00000276201 COPZ2Q9P299 210 aa9.66□□□□□ -0.86
UPF3B-201ENST00000276201 EXOGQ9Y2C4 368 aaKnown RBP9.66□□□□□ -0.86
UPF3B-201ENST00000276201 MAP4K5Q9Y4K4 846 aa9.66□□□□□ -0.86
UPF3B-201ENST00000276201 CLCA3PQ9Y6N3 262 aa9.66□□□□□ -0.86
UPF3B-201ENST00000276201 NINQ8N4C6 2090 aa9.66□□□□□ -0.86
UPF3B-201ENST00000276201 C4orf47A7E2U8 309 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 C5orf58C9J3I9 102 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 H3BN98 237 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 CASKO14936 926 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 FABP7O15540 132 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 TLX2O43763 284 aaPredicted RBP9.65□□□□□ -0.86
UPF3B-201ENST00000276201 SEMA7AO75326 666 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 IFNA7P01567 189 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 SYPP08247 313 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 XPAP23025 273 aaPredicted RBP9.65□□□□□ -0.86
UPF3B-201ENST00000276201 MMP12P39900 470 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 FRKP42685 505 aaPredicted RBP9.65□□□□□ -0.86
UPF3B-201ENST00000276201 AGFG1P52594 562 aaKnown RBP9.65□□□□□ -0.86
UPF3B-201ENST00000276201 SRP54P61011 504 aaKnown RBP9.65□□□□□ -0.86
UPF3B-201ENST00000276201 TAP2Q03519 686 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 IL18Q14116 193 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 GPR176Q14439 515 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 TMEM52BQ4KMG9 183 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 LRRC28Q86X40 367 aaPredicted RBP9.65□□□□□ -0.86
UPF3B-201ENST00000276201 OR8H1Q8NGG4 311 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 LHFPL5Q8TAF8 219 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 ZNF431Q8TF32 576 aaPredicted RBP9.65□□□□□ -0.86
UPF3B-201ENST00000276201 UBE2E3Q969T4 207 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 OTULINQ96BN8 352 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 RNFT2Q96EX2 444 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 ZNF607Q96SK3 696 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 PKP4Q99569 1192 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 SLC17A9Q9BYT1 436 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 ZDHHC5Q9C0B5 715 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 RNF32Q9H0A6 362 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 LIN7BQ9HAP6 207 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 MED17Q9NVC6 651 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 DLL3Q9NYJ7 618 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 COMMD3Q9UBI1 195 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 TNFRSF10DQ9UBN6 386 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 A4GNTQ9UNA3 340 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 LIPT1Q9Y234 373 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 NUBP2Q9Y5Y2 271 aa9.65□□□□□ -0.86
UPF3B-201ENST00000276201 RPS10-NUDT3A0A1W2PQS6 291 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 SLC5A10A0PJK1 596 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 PRAMEF26H0Y7S4 382 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 AKAP8O43823 692 aaKnown RBP9.65□□□□□ -0.87
UPF3B-201ENST00000276201 MMP20O60882 483 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 OR7A10O76100 309 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 IGHA1P01876 353 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 IGFBP1P08833 259 aaPredicted RBP9.65□□□□□ -0.87
UPF3B-201ENST00000276201 ANXA3P12429 323 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 PEPDP12955 493 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 STOMP27105 288 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 CD38P28907 300 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 IMPA1P29218 277 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 RBMS1P29558 406 aaKnown RBP9.65□□□□□ -0.87
UPF3B-201ENST00000276201 SSTR4P31391 388 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 FEN1P39748 380 aaKnown RBP9.65□□□□□ -0.87
UPF3B-201ENST00000276201 INPP1P49441 399 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 SNRPD2P62316 118 aaKnown RBP9.65□□□□□ -0.87
UPF3B-201ENST00000276201 SF1Q15637 639 aaKnown RBP9.65□□□□□ -0.87
UPF3B-201ENST00000276201 FAM205BPQ63HN1 556 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 FAM83HQ6ZRV2 1179 aaPredicted RBP9.65□□□□□ -0.87
UPF3B-201ENST00000276201 ADGRG3Q86Y34 549 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 CMIPQ8IY22 773 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 ESX1Q8N693 406 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 GALNT11Q8NCW6 608 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 OR5M3Q8NGP4 307 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 SLC38A5Q8WUX1 472 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 SKA2Q8WVK7 121 aaPredicted RBP9.65□□□□□ -0.87
UPF3B-201ENST00000276201 CIDECQ96AQ7 238 aaPredicted RBP9.65□□□□□ -0.87
UPF3B-201ENST00000276201 LRR1Q96L50 414 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 ZNF578Q96N58 590 aaPredicted RBP9.65□□□□□ -0.87
UPF3B-201ENST00000276201 ERVMER34-1Q9H9K5 563 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 IL21RQ9HBE5 538 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 MED9Q9NWA0 146 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 MAT2BQ9NZL9 334 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 RHCGQ9UBD6 479 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 FBXW2Q9UKT8 454 aa9.65□□□□□ -0.87
UPF3B-201ENST00000276201 TP53BP1Q12888 1972 aaPredicted RBP9.65□□□□□ -0.87
UPF3B-201ENST00000276201 A0A0A6YYJ9 748 aa9.64□□□□□ -0.87
UPF3B-201ENST00000276201 ISM1B1AKI9 464 aa9.64□□□□□ -0.87
UPF3B-201ENST00000276201 FAM227AF5H4B4 570 aa9.64□□□□□ -0.87
UPF3B-201ENST00000276201 H0Y8X5 98 aa9.64□□□□□ -0.87
UPF3B-201ENST00000276201 CASC3O15234 703 aaKnown RBP9.64□□□□□ -0.87
UPF3B-201ENST00000276201 NME6O75414 186 aaPredicted RBP9.64□□□□□ -0.87
UPF3B-201ENST00000276201 SOX14O95416 240 aa9.64□□□□□ -0.87
UPF3B-201ENST00000276201 C1GALT1C1LP0DN25 315 aa9.64□□□□□ -0.87
UPF3B-201ENST00000276201 HNRNPA2B1P22626 353 aaKnown RBP9.64□□□□□ -0.87
UPF3B-201ENST00000276201 AKT2P31751 481 aa9.64□□□□□ -0.87
UPF3B-201ENST00000276201 HSF2Q03933 536 aa9.64□□□□□ -0.87
UPF3B-201ENST00000276201 MLC1Q15049 377 aa9.64□□□□□ -0.87
UPF3B-201ENST00000276201 GRK1Q15835 563 aa9.64□□□□□ -0.87
UPF3B-201ENST00000276201 KLHL12Q53G59 568 aa9.64□□□□□ -0.87
UPF3B-201ENST00000276201 HIST2H2AA3Q6FI13 130 aa9.64□□□□□ -0.87
UPF3B-201ENST00000276201 TMIGD1Q6UXZ0 262 aa9.64□□□□□ -0.87
UPF3B-201ENST00000276201 SYT14Q8NB59 555 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms