RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 CCDC3Q9BQI4 270 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 TIMM29Q9BSF4 260 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 SLC28A3Q9HAS3 691 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 NUFIP1Q9UHK0 495 aaKnown RBP15.5■□□□□ 0.07
VPS54-201ENST00000272322 NDRG2Q9UN36 371 aaKnown RBP15.5■□□□□ 0.07
VPS54-201ENST00000272322 RWDD3Q9Y3V2 267 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 A0A1W2PQF6 199 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 HYKKA2RU49 373 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 C12orf71A8MTZ7 269 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 UGT2B7P16662 529 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 ANXA11P50995 505 aaKnown RBP15.49■□□□□ 0.07
VPS54-201ENST00000272322 MAT1AQ00266 395 aaKnown RBP15.49■□□□□ 0.07
VPS54-201ENST00000272322 OTPQ5XKR4 325 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 ASB18Q6ZVZ8 466 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 ARL14Q8N4G2 192 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 FAM160A2Q8N612 972 aaPredicted RBP15.49■□□□□ 0.07
VPS54-201ENST00000272322 MIXL1Q9H2W2 232 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 NDUFB11Q9NX14 153 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 KCMF1Q9P0J7 381 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 ADAM29Q9UKF5 820 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 ABCA7Q8IZY2 2146 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 FAM171A2A8MVW0 826 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 HRKO00198 91 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 RDH16O75452 317 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 SLC1A3P43003 542 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 PGDP52209 483 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 CTBP2P56545 445 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 COX10Q12887 443 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 MLLT11Q13015 90 aaPredicted RBP15.49■□□□□ 0.07
VPS54-201ENST00000272322 RPLP0P6Q8NHW5 317 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 NEIL3Q8TAT5 605 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 ORAI1Q96D31 301 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 GAS2L1Q99501 681 aaPredicted RBP15.49■□□□□ 0.07
VPS54-201ENST00000272322 CPNE5Q9HCH3 593 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 ZNF443Q9Y2A4 671 aaPredicted RBP15.49■□□□□ 0.07
VPS54-201ENST00000272322 V9GYH0 126 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 DMDP11532 3685 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 C2orf16Q68DN1 1984 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 B3GALT2O43825 422 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 PRICKLE3O43900 615 aaPredicted RBP15.49■□□□□ 0.07
VPS54-201ENST00000272322 SOX30O94993 753 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 OMPP47874 163 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 IDNKQ5T6J7 187 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 MFSD9Q8NBP5 474 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 OR9A4Q8NGU2 314 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 GNPDA2Q8TDQ7 276 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 FYTTD1Q96QD9 318 aaKnown RBP15.49■□□□□ 0.07
VPS54-201ENST00000272322 ZNF559Q9BR84 538 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 FUZQ9BT04 418 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 TP63Q9H3D4 680 aaPredicted RBP15.49■□□□□ 0.07
VPS54-201ENST00000272322 HCN3Q9P1Z3 774 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 TNFRSF10DQ9UBN6 386 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 DIMT1Q9UNQ2 313 aaKnown RBP15.49■□□□□ 0.07
VPS54-201ENST00000272322 GRIP1Q9Y3R0 1128 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 RP1P56715 2156 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 MED12Q93074 2177 aa15.49■□□□□ 0.07
VPS54-201ENST00000272322 GIMAP1-GIMAP5A0A087WTJ2 511 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 C5orf67F2Z3F1 127 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 ACP2P11117 423 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 MAKP20794 623 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 TBXA2RP21731 343 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 RACK1P63244 317 aaKnown RBP15.48■□□□□ 0.07
VPS54-201ENST00000272322 PSPHP78330 225 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 TSPAN31Q12999 210 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 KLHL22Q53GT1 634 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 MEDAGQ5VYS4 303 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 TMEM53Q6P2H8 277 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 TMEM92Q6UXU6 159 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 THSD4Q6ZMP0 1018 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 ZNF517Q6ZMY9 492 aaPredicted RBP15.48■□□□□ 0.07
VPS54-201ENST00000272322 DGAT2L6Q6ZPD8 337 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 SRFBP1Q8NEF9 429 aaKnown RBP15.48■□□□□ 0.07
VPS54-201ENST00000272322 GIMAP5Q96F15 307 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 SDF2Q99470 211 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 YIPF2Q9BWQ6 316 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 C11orf54Q9H0W9 315 aaPredicted RBP15.48■□□□□ 0.07
VPS54-201ENST00000272322 OR52D1Q9H346 318 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 NEK6Q9HC98 313 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 CLDND1Q9NY35 253 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 KCNE5Q9UJ90 142 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 ISPDA4D126 451 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 PSKH1P11801 424 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 Q6ZSR6 202 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 TAF8Q7Z7C8 310 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 TMEM99Q8N816 258 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 OR13C5Q8NGS8 318 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 RERGQ96A58 199 aaPredicted RBP15.48■□□□□ 0.07
VPS54-201ENST00000272322 MRGPRX1Q96LB2 322 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 SP140LQ9H930 580 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 PLEKHB1Q9UF11 243 aaPredicted RBP15.48■□□□□ 0.07
VPS54-201ENST00000272322 TESQ9UGI8 421 aaKnown RBP15.48■□□□□ 0.07
VPS54-201ENST00000272322 TEAD1P28347 426 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 TLX1P31314 330 aaPredicted RBP15.48■□□□□ 0.07
VPS54-201ENST00000272322 RFX2P48378 723 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 VASPP50552 380 aaPredicted RBP15.48■□□□□ 0.07
VPS54-201ENST00000272322 GNA13Q14344 377 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 OCLNQ16625 522 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 ZNF425Q6IV72 752 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 IL17RDQ8NFM7 739 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 PHOSPHO2Q8TCD6 241 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms