RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 UBE3BQ7Z3V4 1068 aa13.08□□□□□ -0.32
CLN3-248ENST00000636355 KRT27Q7Z3Y8 459 aa13.08□□□□□ -0.32
CLN3-248ENST00000636355 DZIP3Q86Y13 1208 aaKnown RBP13.08□□□□□ -0.32
CLN3-248ENST00000636355 KIF1BPQ96EK5 621 aa13.08□□□□□ -0.32
CLN3-248ENST00000636355 SUCLG2Q96I99 432 aa13.08□□□□□ -0.32
CLN3-248ENST00000636355 PLA2G12BQ9BX93 195 aa13.08□□□□□ -0.32
CLN3-248ENST00000636355 OSBPL3Q9H4L5 887 aa13.08□□□□□ -0.32
CLN3-248ENST00000636355 ZBTB3Q9H5J0 574 aa13.08□□□□□ -0.32
CLN3-248ENST00000636355 BICC1Q9H694 974 aaKnown RBP13.08□□□□□ -0.32
CLN3-248ENST00000636355 ZNF652Q9Y2D9 606 aa13.08□□□□□ -0.32
CLN3-248ENST00000636355 DDX60Q8IY21 1712 aaKnown RBP13.08□□□□□ -0.32
CLN3-248ENST00000636355 HSP90B1P14625 803 aaKnown RBP13.07□□□□□ -0.32
CLN3-248ENST00000636355 SKAP1Q86WV1 359 aa13.07□□□□□ -0.32
CLN3-248ENST00000636355 KAZALD1Q96I82 304 aa13.07□□□□□ -0.32
CLN3-248ENST00000636355 AK7Q96M32 723 aa13.07□□□□□ -0.32
CLN3-248ENST00000636355 RBM19Q9Y4C8 960 aaKnown RBP13.07□□□□□ -0.32
CLN3-248ENST00000636355 SALL3Q9BXA9 1300 aa13.07□□□□□ -0.32
CLN3-248ENST00000636355 CASZ1Q86V15 1759 aa13.07□□□□□ -0.32
CLN3-248ENST00000636355 PARP10Q53GL7 1025 aa13.06□□□□□ -0.32
CLN3-248ENST00000636355 CLEC4GQ6UXB4 293 aa13.06□□□□□ -0.32
CLN3-248ENST00000636355 ZBTB38Q8NAP3 1195 aaPredicted RBP13.06□□□□□ -0.32
CLN3-248ENST00000636355 USP42Q9H9J4 1324 aaKnown RBP13.06□□□□□ -0.32
CLN3-248ENST00000636355 SLC27A3Q5K4L6 730 aa13.05□□□□□ -0.32
CLN3-248ENST00000636355 PLEKHM2Q8IWE5 1019 aa13.05□□□□□ -0.32
CLN3-248ENST00000636355 COPRSQ9NQ92 184 aa13.05□□□□□ -0.32
CLN3-248ENST00000636355 FBXO3Q9UK99 471 aa13.05□□□□□ -0.32
CLN3-248ENST00000636355 EXOC6BQ9Y2D4 811 aa13.05□□□□□ -0.32
CLN3-248ENST00000636355 ATP5J2-PTCD1G3V325 749 aa13.04□□□□□ -0.32
CLN3-248ENST00000636355 SURF6O75683 361 aaKnown RBP13.04□□□□□ -0.32
CLN3-248ENST00000636355 CAMTA2O94983 1202 aa13.04□□□□□ -0.32
CLN3-248ENST00000636355 ADRA2BP18089 450 aa13.04□□□□□ -0.32
CLN3-248ENST00000636355 NLRP10Q86W26 655 aa13.04□□□□□ -0.32
CLN3-248ENST00000636355 LINC00116Q8NCU8 138 aa13.04□□□□□ -0.32
CLN3-248ENST00000636355 RHPN1Q8TCX5 695 aa13.04□□□□□ -0.32
CLN3-248ENST00000636355 STAP2Q9UGK3 403 aa13.04□□□□□ -0.32
CLN3-248ENST00000636355 CCNL1Q9UK58 526 aaPredicted RBP13.04□□□□□ -0.32
CLN3-248ENST00000636355 ZNF330Q9Y3S2 320 aaPredicted RBP13.04□□□□□ -0.32
CLN3-248ENST00000636355 ARAP2Q8WZ64 1704 aa13.03□□□□□ -0.32
CLN3-248ENST00000636355 MX1P20591 662 aa13.03□□□□□ -0.32
CLN3-248ENST00000636355 TTC22Q5TAA0 569 aa13.03□□□□□ -0.32
CLN3-248ENST00000636355 ZNF34Q8IZ26 560 aa13.03□□□□□ -0.32
CLN3-248ENST00000636355 SPEF2Q9C093 1822 aa13.03□□□□□ -0.32
CLN3-248ENST00000636355 QSER1Q2KHR3 1735 aa13.02□□□□□ -0.32
CLN3-248ENST00000636355 RPS6KA4O75676 772 aa13.02□□□□□ -0.33
CLN3-248ENST00000636355 FOXO4P98177 505 aa13.02□□□□□ -0.33
CLN3-248ENST00000636355 GPATCH3Q96I76 525 aa13.02□□□□□ -0.33
CLN3-248ENST00000636355 UPF2Q9HAU5 1272 aaKnown RBP13.02□□□□□ -0.33
CLN3-248ENST00000636355 TTC41PQ6P2S7 1318 aa13.02□□□□□ -0.33
CLN3-248ENST00000636355 RTL9Q8NET4 1388 aa13.02□□□□□ -0.33
CLN3-248ENST00000636355 RIC1Q4ADV7 1423 aa13.02□□□□□ -0.33
CLN3-248ENST00000636355 CIAO1O76071 339 aa13.01□□□□□ -0.33
CLN3-248ENST00000636355 ANP32AP39687 249 aaKnown RBP13.01□□□□□ -0.33
CLN3-248ENST00000636355 RFX5P48382 616 aaPredicted RBP13.01□□□□□ -0.33
CLN3-248ENST00000636355 PDE1AP54750 535 aa13.01□□□□□ -0.33
CLN3-248ENST00000636355 OS9Q13438 667 aaPredicted RBP13.01□□□□□ -0.33
CLN3-248ENST00000636355 CLASRPQ8N2M8 674 aaKnown RBP13.01□□□□□ -0.33
CLN3-248ENST00000636355 UBN2Q6ZU65 1347 aa13□□□□□ -0.33
CLN3-248ENST00000636355 CDC45O75419 566 aa13□□□□□ -0.33
CLN3-248ENST00000636355 G3BP1Q13283 466 aaKnown RBP eCLIP13□□□□□ -0.33
CLN3-248ENST00000636355 HLFQ16534 295 aa13□□□□□ -0.33
CLN3-248ENST00000636355 SH3TC1Q8TE82 1336 aa12.99□□□□□ -0.33
CLN3-248ENST00000636355 CSF1RP07333 972 aa12.99□□□□□ -0.33
CLN3-248ENST00000636355 PTPN12Q05209 780 aaKnown RBP12.99□□□□□ -0.33
CLN3-248ENST00000636355 EPHA10Q5JZY3 1008 aa12.99□□□□□ -0.33
CLN3-248ENST00000636355 CASC1Q6TDU7 716 aa12.99□□□□□ -0.33
CLN3-248ENST00000636355 LMBR1LQ6UX01 489 aa12.99□□□□□ -0.33
CLN3-248ENST00000636355 GPR108Q9NPR9 543 aa12.99□□□□□ -0.33
CLN3-248ENST00000636355 NARFQ9UHQ1 456 aa12.99□□□□□ -0.33
CLN3-248ENST00000636355 TBC1D2BQ9UPU7 963 aa12.99□□□□□ -0.33
CLN3-248ENST00000636355 RTCBQ9Y3I0 505 aaKnown RBP12.99□□□□□ -0.33
CLN3-248ENST00000636355 EP400Q96L91 3159 aa12.98□□□□□ -0.33
CLN3-248ENST00000636355 ZNF609O15014 1411 aa12.98□□□□□ -0.33
CLN3-248ENST00000636355 ABCC12Q96J65 1359 aa12.98□□□□□ -0.33
CLN3-248ENST00000636355 ERC2O15083 957 aa12.98□□□□□ -0.33
CLN3-248ENST00000636355 SMARCA5O60264 1052 aaPredicted RBP12.98□□□□□ -0.33
CLN3-248ENST00000636355 PDE8AO60658 829 aa12.98□□□□□ -0.33
CLN3-248ENST00000636355 GSPT1P15170 499 aaKnown RBP12.98□□□□□ -0.33
CLN3-248ENST00000636355 IL15P40933 162 aaPredicted RBP12.98□□□□□ -0.33
CLN3-248ENST00000636355 CTSWP56202 376 aa12.98□□□□□ -0.33
CLN3-248ENST00000636355 TRMT112Q9UI30 125 aaKnown RBP12.98□□□□□ -0.33
CLN3-248ENST00000636355 A0A1B0GUL6 1792 aa12.98□□□□□ -0.33
CLN3-248ENST00000636355 RFX7Q2KHR2 1363 aa12.97□□□□□ -0.33
CLN3-248ENST00000636355 APBB1O00213 710 aa12.97□□□□□ -0.33
CLN3-248ENST00000636355 PLSCR1O15162 318 aa12.97□□□□□ -0.33
CLN3-248ENST00000636355 GNPATO15228 680 aa12.97□□□□□ -0.33
CLN3-248ENST00000636355 GLRX3O76003 335 aaKnown RBP12.97□□□□□ -0.33
CLN3-248ENST00000636355 SSFA2P28290 1259 aa12.97□□□□□ -0.33
CLN3-248ENST00000636355 PTF1AQ7RTS3 328 aa12.97□□□□□ -0.33
CLN3-248ENST00000636355 TICAM2Q86XR7 235 aa12.97□□□□□ -0.33
CLN3-248ENST00000636355 UTP14AQ9BVJ6 771 aaKnown RBP12.97□□□□□ -0.33
CLN3-248ENST00000636355 NYXQ9GZU5 481 aa12.97□□□□□ -0.33
CLN3-248ENST00000636355 IRS4O14654 1257 aaPredicted RBP12.96□□□□□ -0.33
CLN3-248ENST00000636355 NTSR2O95665 410 aa12.96□□□□□ -0.33
CLN3-248ENST00000636355 IFIT2P09913 472 aaKnown RBP12.96□□□□□ -0.33
CLN3-248ENST00000636355 GPTP24298 496 aa12.96□□□□□ -0.33
CLN3-248ENST00000636355 CCDC57Q2TAC2 916 aa12.96□□□□□ -0.33
CLN3-248ENST00000636355 FAM182BQ5T319 152 aa12.96□□□□□ -0.33
CLN3-248ENST00000636355 OTUD7AQ8TE49 926 aaPredicted RBP12.96□□□□□ -0.33
CLN3-248ENST00000636355 ARXQ96QS3 562 aa12.96□□□□□ -0.33
CLN3-248ENST00000636355 PA2G4Q9UQ80 394 aaKnown RBP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms